AMCG00017297 (cacna2d2,LOC107666002,LOC102776731)


Basic Information

Item Value
gene id AMCG00017297
gene name cacna2d2,LOC107666002,LOC102776731
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53254667 ~ 53275017 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017297
ATGAAACTCGACGCACCTCGGAGACTGACGCGCACGGAGCCTCGAGTAGCGCTGTGCCATCCCGCCCGCCCCGAGGGCCGCTCTCCTGAGTACCTGGACGTCCTGGGCCGGCCCATGGTCCTGGCAGGAAACAAAGCCAAGCAAGTCCAGTGGACCAATGTCTATCAAGACGCTCTGGGTCTGGGCCTCGTGGTGACCGGGACGATGCCCGTCTTCAACCTCACGGTGGAAGGGAAGTCACAGAACCAGCTGATCCTGGGGGTGATGGGGGTGGACATCCCCCTCAACGATATCAAGAAGCTGGCTCCACGCTACAACCTGGGAGCAAACGGATACATCTTTGCCATCGACCCCAATGGCTACGTGCTGCTGCACCCCAACCTGCAGCCCAAGatcATTAACTTCCGAGAGCCCGTCACCCTGGACTTCCTGGATGCGGAGCTGGAGGATGGCAACAAGGAGGAGATCCGTCGGCACATGATCGATGGGCGGCCCGGACACAAGAGGATCGTCACGCTCCGGTACATCGATGAGGCGGTGCGCACCTACACCTGGACGCCTGTCAACAGCACCGACTACAGCCTGGGCCTGGTGCTGCCTGCCTACAGCGAGTTCTACATCCGCGCCAACCTGAGCGACCAGATCCTGCAGGTTCAGTATTTTGAGTCTCTGCTTCCTGGCAGTTTTGAGTCCGAGGGACATGTATTCATTGCTCCCAGGTATGGCTTCCTGGCACTGTTTGCTGCCACCGACGGAGGAGTCACACGGGTCTTCCCTAACAACCTGGAGTCCCTGGACCCCGAGAACAACACCATCGGCATCCTGGTCAGCACCGCCGTGGACATCAACATCAACGGGAAGGTCATCAAACCAGCAGTGGTTGGGGTTAAGTTGGACCTGGAGGCCTGGGTGGAAAAATTTAAGATCCTGGCCAGCAACCAGTCCGAGAGCAGACAGGGTTTCCGCAAGTGTGGACCCTCCAGCAGCTGTGAGATGGACTGTGAAGTCAACAGTGATGATCTGCTCTGTGTCCTGATCGACGACGGTGGTTTCCTCGTCATGTCCAACCAGAGGGAGCACTGGAGCAAGATCGGGATGTTCTTCAGCGAGGTGGATGCCTCCCTGATGCACGCACTCTACAACAACTCCTTCTACACCAGGAAGGAGTCCTACGACTACCAGTCCGTCTGCGCGCCCAGCCCCAACAGCAACACCGGGGCGGCGCCGCGGGGCGTCTTCGTGCCCACCATCGCAGACTTCCTGAATCTCGCCTGGTGGACGTCTGCCGCGGCCTGgtCGTTGCTGCAGCAGCTGTTGTACGGACTGGCCTACAGCAGCTGGTTCAACACCGATGAAGTCACGGCCGAGGGGATGGACTCCAGGGAGACGAGCTGCATCATGAAGCAGACGCAGTACTACTTCACCAACAGCACAGCCTCCTACAACAGCCTGCTGGACTGCGGCAACTGCTCCAGGCTTTTCCACGCGAAGAGGATCAACAACACCAACCTGCTGTTCGTGGTTGCAGAGAAGATGCTGTGCAACTCGTGTGACGTGAACAAGCTGAGCCAGGCGGAGACGCGCTGTATCCTTTACACTGTGGCTGCGAGGGGCCCTCTGGGCTCTTTGGGCCCTTTGAGCTCTGCGTTGGCCAGTGGTCTTTCTCTCACCAGCAGTGCACAGTCCCTGTCCTACTGCCCCTCGATCCAGATGCTTTAA

Function

symbol description
cacna2d2 Predicted to enable voltage-gated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to act upstream of or within several processes, including neuromuscular junction development; positive regulation of organ growth; and rhythmic synaptic transmission. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated calcium channel complex.

NR:

description
PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-2

GO: NA

KEGG:

id description
K04859 CACNA2D2; voltage-dependent calcium channel alpha-2/delta-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017297 True 1719 mRNA 0.59 20 53254667 53275017

Neighbor

gene id symbol gene type direction distance location
AMCG00017289 acy1,LOC105933287 coding upstream 302712 52936900 ~ 52951955 (+)
AMCG00017290 NA coding upstream 320979 52930490 ~ 52933688 (+)
AMCG00017288 NA coding upstream 332270 52918052 ~ 52922397 (+)
AMCG00017279 NA coding upstream 494163 52757463 ~ 52760504 (+)
AMCG00017275 NA coding upstream 510776 52741163 ~ 52743891 (+)
AMCG00017301 NA coding downstream 11412 53286429 ~ 53302089 (+)
AMCG00017300 NA coding downstream 81564 53356581 ~ 53363297 (+)
AMCG00017303 NA coding downstream 99867 53374884 ~ 53380042 (+)
AMCG00017307 NA coding downstream 105878 53380895 ~ 53387713 (+)
AMCG00017308 NA coding downstream 113367 53388384 ~ 53392592 (+)
G19664 NA non-coding upstream 229733 53024625 ~ 53024934 (+)
G19660 NA non-coding upstream 247136 53007160 ~ 53007531 (+)
G19641 NA non-coding upstream 319264 52933764 ~ 52935403 (+)
G19617 NA non-coding upstream 390944 52858153 ~ 52863723 (+)
G19591 NA non-coding upstream 399945 52850931 ~ 52854722 (+)
G19674 NA non-coding downstream 1864 53276881 ~ 53320938 (+)
G19679 NA non-coding downstream 31078 53306095 ~ 53335384 (+)
G19729 NA non-coding downstream 133948 53408965 ~ 53409300 (+)
G19751 NA non-coding downstream 177113 53452130 ~ 53533874 (+)
G19789 NA non-coding downstream 396967 53671984 ~ 53673814 (+)
AMCG00017287 NA other upstream 420625 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 437298 52814253 ~ 52817369 (+)
G19114 raf1,LOC108276324 other upstream 2691389 50559450 ~ 50563278 (+)
G19113 NA other upstream 2701682 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 3527100 49713467 ~ 49727567 (+)
G19683 NA other downstream 60892 53335909 ~ 53339655 (+)
G19754 NA other downstream 228415 53503432 ~ 53536464 (+)
G19829 NA other downstream 515530 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 519609 53794626 ~ 53805796 (+)
G19854 NA other downstream 578890 53853907 ~ 53855839 (+)

Expression


Co-expression Network