AMCG00017301


Basic Information

Item Value
gene id AMCG00017301
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53286429 ~ 53302089 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017301
gtgtgtgtgtgttgcagtgtgtgtgacagtgtgtgttgtgtgtgacagtgtgtgtgtgtgtgtgtttgtactgttcTTTTCTCGTGGGCAGGATGTAAACATGAGGAAATCACGCGGGTGTCCAGTAGTGCTGTCCTGAGCAGCAGACAGAgacgcagacagacagacagacagacgcacaaaCAGCTGGACACTTGGTCCCGCCCACCGCTGGACTCTCCGCTTCACAACAGCGCAGCGCCGAGCCGAGCCGCTTCGCAATGGAGTCCCTTCTCGCCTGCCTGACCTGGGCGCTGCTGGCGGCTCTGGGAGCAGCATCGAGGAGCCCTCTGAATGACTTCCAGCGCTCGGAAGGACGTGAGCTGGTGCCCATGAATGAGAAGACCAGCCGGGTGCGCTCTCTGCCTGGCCTGACTCTGGAGGAGTGTGCCCAGCAGTGCTCGGAGTCCCTGGACTGCAGCCTTGCCGAGGTGAAGCGCAACGTGAACTCTGACCTGTATGAAAAGAAAGATTACGTTAGGAAGTGCATCGTGGGTAATGGGATGAATTACCGTGGCAGCGTGCGGGTGACGGTGAGCGGGCGTGAATGCCAGCACTGGTGGTCCAGGTTTCCACATGACCACAGATACACACCCACGTCCCAGAACGGCCTGGACCTAAACTACTGTCGCAACCCGGACGGCGACCCCAAGGGCCCCTGGTGTTACACCACCGACCCAGACAAGCGCTACGAGTCTTGCGGGATCCCCTCGTGTGAAAACGAGGTGTGCATTACCTGCAATGGGGAGGATTATCGCGGACAGGTGGACCACACTCGGAACAACCTGGAGTGTCAGCGCTGGGATCTCCAGGTCCCCCATCAGCACATATACCAGCCTGAGAAGTACCCGGATAAGAGTTTGGATGACAACTACTGTCGCAATCCGGACGCCTCCCCCGTCCCCTGGTGCTACACCACTGACCCCAAGGTGGAGCGGCAGAACTGCCAAATCAGCAAGTGCTCCCAtccatccccctctccccaGAGACGCTCTCGCTCCAGCCACACGACGCACTGTTTCCGCGGCCGTGGGGAAGACTACCGCGGCAGTGTCAACGAGACCACCTCGGGCATCCCCTGCCAGCGCTGGGACGCACAGAAGCCGCACAAGCACCCCTTCATCCCGGAGATCTATGAGTGCAAAGGGCTGGAGGAGAATTACTGCCGGAACCCTGACGGCTCGGAGGCGCCCTGGTGTTTCGCATCCGTCCCGGAGATGAGGACGGCCTTCTGCCTGCAGATCAAACGCTGCGCCGATGACGTCGAGGCAGAAGACTGCTATCATGGCAATGGGAACAACTACCAGGGGACGGTCCGCAAGACCCGCAAAGGAACCGCCTGCCAGAAGTGGAGCGTCAACACCCCTCACAAAACCAAGATTAACCCAACCACCTTCCCCCACGCCAACCTGACCGAGAACTACTGCCGCAACCCCGACGGAGATCGGCACGGGCCCTGGTGCTACACCACCGACCCCAAGACCGAGTTCGACTACTGCGCCATCAAACAGTGTGCGGGAGAGGTCGTCTCTCTCATCGAACCCTCAGAGAATGTGGAGTTTAACGAGTGTGGCAAGAGGGAGGACCGAGTGAACAACTTTGCACGCATCGTGGGCGGCACCCCCGGGAACTCACCCTGGACTGTCAGCCTGCGGGACAGgaaAGGAAACCATTTCTGTGGAGGTTCCCTAGTCAATGCGAAGTGGGTCATCAGCACCCGTCAGTGCTTCTCATCCTGCGACGCCGATCTCACCGGGTACTCGGCCATGATGGGAACCGTGTTCAGAAACCCAAAGGACGGCGAACCGACCGAGCAGAACATCCCCTTGAGCAGCATCTCATGCGGGCCCTCCGAGTCCTACCTGGTCATGCTGCAGCTGGAATCGCCGGTGCAGTTCAGTGAGCGGGTGTCTCAGATCTGTCTGCCCCCTGAGCGTTTCATCGTCCCAGAGGGCACCACCTGTGAGATTGCCGGCTGGGGGGAGACCAGAGGCACCGGGAATGAGAACGTGCTCAACGTGGCCCAGATGCCAGTTCTCGGCAACAAGGAATGTAACAAGTACTTCCGGAGTCGCGTGAAGGACAACGAGATGTGCACCGCGCCCTTCCAGGCCGGAGTAGGCGCCTGCGAGAAAGACTATGGCGGCCCCCTCGCCTGCCAGAACAGCGACTGCTGGGTGCTAGAGGGCGTGATGATCCCCATGCGGCGCTGCGGACACCCAGGGCAGCCCAGCATCTTCATCCGCGTGTCTGTGTACGTGGACTGGATCAAGAAGGTCATCGGCATCGCATAAGAGACTGCTCCCTCCCGCCAcgccccaccccacccctcgTCCCACCACACCCCTCGCCCCACAGCCTCCTGCTCCGCTGATAGTCTGGTCCTGGGGGTCTGCAGGGAATTGTAAACTATTGGTTGAGTTCTGAACAACTCCATCCATTGGCAATGATTTGTgttgttgcattttttatttttttggcactCGTTAGTTAACATTTTTCCCAGATCTCTCCTCGTGGTCTGGCTTCAAAGGCACCCAGCCAGACTGTGGCTCCCCAGGACCAGAGCTTGTGTAGCACACCCCCCAGGTGAACGCGGGACTCAGTTTGATACTGGAGTCTGTGCCCCGAGGTTTCAGTCCCATTACCTTTGCTTTCCTCCAGCTGATAAGCCTCCCCCAGGTCCCCTTCACATCCCTTTGATCTGTGAAGCACCTTCCCCTTGTCCTTTCAACTGCTTTCTTTGTCCCCGTTTCCCCACATGTGCCGGGATGGCACTGAGCTGTTTCGAATGTATTTTAATGGGTTTGCAGGCCAGCCCTTGGCCTTGGCGACAACTGCAGTCACTGTGATCAGCGGCCACAGGATGCTAAGCCATGCTACTCCCTCGGCATAGTTTGTGGTGAATCAGGTCACCAGTATTGAGCCCAGCTTTCTTACGAAATTATACATCCTAGCCGGGGTTTTAACGCAGCGTTTGGCATCCCTGTGTTCACTGCTTGTGTCCGAGTGACACTGGGTTACGATTGTGACTTCAGTCGAACTGTGAGAAAATCCACGTTTTCATCCCAAAGttccttattttttatattaatattatttgtttcaataCTTTGATGTTTTATCCAGTGATGGATGTCTGTGACAATACTGccgtgtgcatttatttttctaaacatgTTAATTGAAGTGTTTTCTGCTTTCTCAGTTCCTCCTCAGTGAAGGTTTAGACTCGAGGTCTGTGTCAGGAATGTGAAGtgaatgtttttggttttgtatatttattctttCTGTGCGAGACTGAATAGTGGCCGGGCGGGGCTGCCGAAAATGTCGAACATGTATGTAAGACAATCCCTTTACTTTGAGTCGTCATAGAGAGCCCGATACTCACCCGATACAGTTCAGTGGGACAGTTGTCATTTAGGGGCCGAACCATACAAATTCAGACTCCCATTCTCAGCATCACAATCACTAGAGTCTTTCAGATCATATTTATGCTCCCAGTGTTCGCTTTTATCTCTGGAATCAAATATATATCTAATTCTCTGCAAGATTCGTGACTGTTGGAGGCTCTCAGTTGGGTGGGCGCTCATGTTACAATTGCCCACAAGGCGGCAGTGTTACATGACACGAACGATAGTACTCAATCCTGGAATGTATCAAATTACACAATATATGTGTTATTAGTAACTGTGGTGAGtgtaatcaatcaatcgatACATAAATGACTAATATGTAGCatagttacagtaaatgttttttttctttctatacaTGTTTGGTTGTATACATGTATACCCACCTCCTCTTGGAGTAATAAAATGATACTATGTTTTAATCTCATAAATTGACACTGTTCTGTAGTGGATGTACTCTCTGTGGTAAACCTATTGTATCTGCAGTATTAGTTCTGCCCTGCTGTAGACAGGAGGGGGTTTGACTTAAAACTCTGCAAAGATGTTCAAAATGGACAGACAAGTCAACGCAAAGGATTGTGCGTCAGATGGGGCAGTGAGACTAGGAGCCATCGCTCACACAGAGAGGCACGTGGCTCTGTGATGCAACTGCCTAAAATCAGTGTGGAAGGGCCACAGTGGACTGGCTGAGAGCCTGGGACGTGTTGGACACACCAAGTGACCAGCAGAGCTCGGGGGTCCTCTCTGGTGCGTAACCTCGCTCTCCTGTCCTATCTCATCATCGGTTTGGGTTCGAGCGCCCGGGCCAGCACCGTGGTCTACTCCTCATGCAGTTGGCTGCTCCGGCTCTCCTGTCCCTGCGCCGCTGCTCTGCCCGGGCTCTCATTATCTGTCAGCCGtttggtgtgggggggggggtctcggAATGCCAAGCGTCTGTGCCGCGGAATGTCTTTCATCCCCTCAAccggtgtctgtgtgtgggcaTTAGCAGGCATGACTGGCCCTGTTTAATGTGCAAACGCAACCCCCTCTCAACCCCTGCCACCTGCACCCCCCGTTCCCACCCCCTTTATTACACTCACACTCGGCCCTCTATCCGGATTGTGATCATgtgtgttgttgtcattgtttttgctAAAGGggtgttggggaaaaaaactgcataTCTTTCTGAAATTCACCAGACTGTTCCAATGTCATtgacccctctctctgtctcttgtcCCCAAATGTCAAATGGGTGTCTTGCAATCtggattaaaatacacatcTCTTCACGCCAGCAGCATCCGGGTCTGTTGGTCTGTGTTCTGGCTCGGCTGGTCCTGGCTGCTGTGACAATGACTAATCAAAGTGCTAGTAAAACAATCCGCAGGAAAAAGACATCTAATTAAATCTAACATTTCTGACCAGGTTTGGAGCAATTTCATTCCTCGTTGGTTACCTCTGCGTGGGGAGAACATTTTCAAGGTAGCAGTGAACACAACTGCTGGTCAAAAACCTCCTGAGCACTTTCCTGTGTAAATCTGCTGTGCAAATCTTTagcctttaaaatgtgtcaaatgaAGCACAAGCCATGCTGAGGTCTCCTGGGTGTGCTGTGGGGTTAACCCTCACTCCCTCCCAGCACCAGCTCCCAGTCTCTCTCCATCACTGCTCCTAAATCCCTCGTGTGCTTCTCTTTGGATGCCCCCCCCATCCCTTCTCTGTAAAGAAATTCCTTTGTGCTCCTACAGACCTGCAGTATGTGCTCATTGTATGGGAACGGCGACTCGCTCAGCCCATTCTATAGGACGATTTCCAGCCAATAAACCAATGGAATCCAGC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0030282 bone mineralization biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K23441 MST1; hepatocyte growth factor-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017301 True 5288 mRNA 0.53 19 53286429 53302089

Neighbor

gene id symbol gene type direction distance location
AMCG00017297 cacna2d2,LOC107666002,LOC102776731 coding upstream 11412 53254667 ~ 53275017 (+)
AMCG00017289 acy1,LOC105933287 coding upstream 334474 52936900 ~ 52951955 (+)
AMCG00017290 NA coding upstream 352741 52930490 ~ 52933688 (+)
AMCG00017288 NA coding upstream 364032 52918052 ~ 52922397 (+)
AMCG00017279 NA coding upstream 525925 52757463 ~ 52760504 (+)
AMCG00017300 NA coding downstream 54492 53356581 ~ 53363297 (+)
AMCG00017303 NA coding downstream 72795 53374884 ~ 53380042 (+)
AMCG00017307 NA coding downstream 78806 53380895 ~ 53387713 (+)
AMCG00017308 NA coding downstream 86295 53388384 ~ 53392592 (+)
AMCG00017304 NA coding downstream 96766 53398855 ~ 53408838 (+)
G19675 NA non-coding upstream 3223 53239106 ~ 53283206 (+)
G19664 NA non-coding upstream 261495 53024625 ~ 53024934 (+)
G19660 NA non-coding upstream 278898 53007160 ~ 53007531 (+)
G19641 NA non-coding upstream 351026 52933764 ~ 52935403 (+)
G19617 NA non-coding upstream 422706 52858153 ~ 52863723 (+)
G19679 NA non-coding downstream 4006 53306095 ~ 53335384 (+)
G19729 NA non-coding downstream 106876 53408965 ~ 53409300 (+)
G19751 NA non-coding downstream 150041 53452130 ~ 53533874 (+)
G19789 NA non-coding downstream 369895 53671984 ~ 53673814 (+)
G19836 NA non-coding downstream 511696 53813785 ~ 53813987 (+)
AMCG00017287 NA other upstream 452387 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 469060 52814253 ~ 52817369 (+)
G19114 raf1,LOC108276324 other upstream 2723151 50559450 ~ 50563278 (+)
G19113 NA other upstream 2733444 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 3558862 49713467 ~ 49727567 (+)
G19683 NA other downstream 33820 53335909 ~ 53339655 (+)
G19754 NA other downstream 201343 53503432 ~ 53536464 (+)
G19829 NA other downstream 488458 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 492537 53794626 ~ 53805796 (+)
G19854 NA other downstream 551818 53853907 ~ 53855839 (+)

Expression


Co-expression Network