AMCG00017325 (nckipsd)


Basic Information

Item Value
gene id AMCG00017325
gene name nckipsd
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53794626 ~ 53805796 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017325
ATGTACCGCTCTCTGCACTCGTTCCGCTCCCCGGAGCCCAACTCCCTGCGCTTCTCCGCCGGAGAGACCTTCCTGATCCTGGAGCGCAGCAACCAGCACTGGTGGCTCGGGTCCCGGTCCAGCTCGGGGGAGAGCGGCTACATCCCCGCCTCCTACATCGAGAAGATCCAGaccCCGGAGCATGACGAGGTGCTGCAGTCCATAGACCGGGCCATCGAGGCCATCCACAATGCCGCCATGAGCAATGGGGGCAAGTACAACCTGGAGCAGAGAGACGTGCTGCAGAAGCTGATTCATCACAGGAAAGAGACTCTCTCTCGGAGGAGCCCACCCCCCGTCAATCACACGCGTGTGCTGCCCTCCTCCACCACCCccatcacccccccacccccagagaAACGCAGGGGCCCCCGCCGGCCagaaccCGAGGTGCCGTCCAGGACCTCCTCCATTGGCACTAGCTCCGCCCTCCCCGTCAGCACCGCACCCTCCCCCTCGCTCAGCTCTGGCTCCCTGGAGTCAGGCTCCACACACTCCCCCGCGTCCTCGGAGACCAGCCTCCCCAGCCTGACGGCCACGCCCCCCCCGGTGCCCAGCCGTGCCAGAGGCCCCGCCCCGGCCCCGCCTGGCCCGGCCccggccccccagccccccctgCCCAAGAAGCAGGCTGCCCCCCAGCCCCAGTCTCCGTCTCCCTCCCCCCAGCGCCCCTCCGAGGCCCTGTCTGAGTCGGAGGCCAGCCTGGCCCCGTCCATGGCCTCCCGCAGCCCCATCCCCTGCCCCTCCCACAGCCCCAGCCGCACACGGAAGGGGGCGTCGGGGGGCGTGTCCGGCAGCATCGGGGCGGAGCTTGTGGAGCTGGTGCGGCGGAACACCCAGCTGAGTTACGAGCTGTCGCGCGTCGCTGTGGGGACCGTCGTGGGACACCTGCAGACCGCCATCCCACACATCGCCGATGCCATGGAGCAGGTCCTCCTCTCACTGCTGCAGAGCCAGGACGCGGGGGCCGGGCTGCCACGGGGGCAGCTGTGTCAGGACGAGCAGCGGCTGCAGACAGACGCCGACCCCGAGCTGGCCCGGGACATGCAGACAGACACGCAAGatcaCCAGAAGATGTGCTACTCCGCTCTGGTCCTGGCCATGGTCTTCTCCATGGGGGAGCCCCCTCCTTACCACCACTACGAcgaccctgtgtgtgtgttcggccatgcccccgcccccccccacgcGGTGCTCAAGTTCCTGCAGGACATGTTGTCCTCCCGGGACACTGCCTCCGTCTTCTACCGCACAGACATGATGGTGATGATCGACATCGCAGTGCGGCACATCGCCGACCTGTCCCCCGGGGACAAGCTGCGGATGGAGTACCTGTCTCTGATGCACGCCATCATACGCTCCACAGACTACCTGGAGCACCGGCACCGCCTGGACGACCTGCGGGGGGCGCTGCGCCGCATCCtcggggaggaagaggaggaaggggaggaagaggaggagcaggagacgGGGAAGAAGGGTGGGAAGGGAGGCGTGGCGGCCGTGCAGCGCATGGACAAACTGATCGTCCAGGAGATATTCAGAGAATTCCCTCAGGTCTCTGAGACCGAGACCGAGCACGGGcactaagagagagagagagagggatgggagggagaagaggacaggagggagggatgggaggagggagagagggatgggaggAAGGGACAGGATGGAAATAGCATccatctcctctcctcccctcatccctctctcctccgTCTGGTCGGTACAGAAGCCTGTGACGAGGCTGACACTGTTACACAAGCAACACTAACAGTAACACACTGACCGCAGAGCAACACTGACGCCTCCGTCTGTGCGTCTGTCCGCCCCCGTGAGAGcgagtgtgtatctgtgtatctgtgtgtgtgtacatgtgtgtctgtgtgtctgtatgtgtctgtgagcgtgtgtgtgtacatgtgtatctgtgtgtctgtgagcgtgtgtgtgtacatgtgtgtctgtgtgtctgtgagcgtgtgtgtgtacatgtgtatctgtgtgtctgagcgtgtttgtgtacatgtgtatctgtgtgtctgtgagcgtgtgtgtgtacatgtgtgtctgtgagcgTGTTTGTGTacttgtgtatctgtgtgtctgtgagcgtgtgtgtgaacatgtgtgtctgtgtgtctgtgagcgtgtgtgtc
>TU24611
GACGGAGGGATCCGTGCGGGAgaacagctgagagagagagagagagagagagagagagagagagagagagagagattgaacaGGGAGCAGAGCAGAGACGACGCAGTGTGGCAGGTCATACCAGACTGCTCTCAGGGCGGGGAAGACACTCGGCCGGTCCGGCCCGGCATGTACCGCTCTCTGCACTCGTTCCGCTCCCCGGAGCCCAACTCCCTGCGCTTCTCCGCCGGAGAGACCTTCCTGATCCTGGAGCGCAGCAACCAGCACTGGTGGCTCGGGTCCCGGTCCAGCTCGGGGGAGAGCGGCTACATCCCCGCCTCCTACATCGAGAAGATCCAGaccCCGGAGCATGACGAGGTGCTGCAGTCCATAGACCGGGCCATCGAGGCCATCCACAATGCCGCCATGAGCAATGGGGGCAAGTACAACCTGGAGCAGAGAGACGTGCTGCAGAAGCTGATTCATCACAGGAAAGAGACTCTCTCTCGGAGGAGCCCACCCCCCGTCAATCACACGCGTGTGCTGCCCTCCTCCACCAGTGACCTCGCGCTCAGCCACGCCCACCCGCCCAATGGGATGAGCCGGGCCTACGGGCGGCAGGCCAGCGAGCCGATCGCCGGCAGCCTGGACTCGGGCCGTGGGGACGAGGAGCTGTACCAGGT

Function

symbol description
nckipsd Predicted to enable Arp2/3 complex binding activity and myosin binding activity. Predicted to be involved in endocytosis. Orthologous to human NCKIPSD (NCK interacting protein with SH3 domain).

NR:

description
PREDICTED: NCK-interacting protein with SH3 domain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017325 True 2207 mRNA 0.64 11 53794794 53805796
TU24611 False 662 TUCP 0.64 3 53794626 53800301

Neighbor

gene id symbol gene type direction distance location
AMCG00017323 NA coding upstream 59651 53722534 ~ 53734975 (+)
AMCG00017319 LOC106566567,LOC105013928,LOC102296397,LOC101473935,LOC102778284,LOC103370863 coding upstream 104720 53674878 ~ 53689906 (+)
AMCG00017314 NA coding upstream 124854 53659498 ~ 53669772 (+)
AMCG00017311 NA coding upstream 287429 53480838 ~ 53507197 (+)
AMCG00017305 NA coding upstream 365565 53419540 ~ 53429061 (+)
AMCG00017330 celsr3,LOC107591847,LOC107679402 coding downstream 11476 53817272 ~ 53821473 (+)
AMCG00017326 celsr3,LOC106566780 coding downstream 25075 53830871 ~ 53834907 (+)
AMCG00017324 NA coding downstream 70790 53876586 ~ 53883504 (+)
AMCG00017335 LOC108435819,LOC108440644,LOC107712078,LOC107721176 coding downstream 207765 54013561 ~ 54033037 (+)
AMCG00017336 NA coding downstream 230718 54036514 ~ 54056665 (+)
G19789 NA non-coding upstream 120812 53671984 ~ 53673814 (+)
G19751 NA non-coding upstream 260752 53452130 ~ 53533874 (+)
G19729 NA non-coding upstream 385326 53408965 ~ 53409300 (+)
G19679 NA non-coding upstream 459242 53306095 ~ 53335384 (+)
G19674 NA non-coding upstream 473688 53276881 ~ 53320938 (+)
G19836 NA non-coding downstream 7989 53813785 ~ 53813987 (+)
G19838 NA non-coding downstream 10049 53815845 ~ 53816076 (+)
G19889 NA non-coding downstream 107022 53912818 ~ 53914877 (+)
G19899 NA non-coding downstream 142962 53948758 ~ 54041033 (+)
G19887 NA non-coding downstream 153667 53959463 ~ 53961838 (+)
G19829 NA other upstream 1932 53790547 ~ 53792694 (+)
G19754 NA other upstream 258162 53503432 ~ 53536464 (+)
G19683 NA other upstream 454971 53335909 ~ 53339655 (+)
AMCG00017287 NA other upstream 960584 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 977257 52814253 ~ 52817369 (+)
G19854 NA other downstream 48111 53853907 ~ 53855839 (+)
G19860 NA other downstream 58312 53864108 ~ 53864718 (+)
AMCG00017331 NA other downstream 109329 53915125 ~ 53936482 (+)
G19896 NA other downstream 133741 53939537 ~ 53947618 (+)
G19956 NA other downstream 249004 54054800 ~ 54055175 (+)

Expression


Co-expression Network