Item | Value |
---|---|
gene id | XLOC_006160 |
gene name | NA |
gene type | non-coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007124.7 |
NCBI id | CM002897.2 |
chromosome length | 52186027 |
location | 37538653 ~ 37544321 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
id | name | namespace |
---|---|---|
GO:0022402 | cell cycle process | biological_process |
GO:0098813 | nuclear chromosome segregation | biological_process |
GO:1902850 | microtubule cytoskeleton organization involved in mitosis | biological_process |
GO:0072698 | protein localization to microtubule cytoskeleton | biological_process |
GO:0006974 | cellular response to DNA damage stimulus | biological_process |
GO:0006996 | organelle organization | biological_process |
GO:0051225 | spindle assembly | biological_process |
GO:0007017 | microtubule-based process | biological_process |
GO:0048285 | organelle fission | biological_process |
GO:0043414 | macromolecule methylation | biological_process |
GO:0007049 | cell cycle | biological_process |
GO:0007051 | spindle organization | biological_process |
GO:0016569 | covalent chromatin modification | biological_process |
GO:0016570 | histone modification | biological_process |
GO:0007059 | chromosome segregation | biological_process |
GO:0000226 | microtubule cytoskeleton organization | biological_process |
GO:1903047 | mitotic cell cycle process | biological_process |
GO:0006259 | DNA metabolic process | biological_process |
GO:0006261 | DNA-dependent DNA replication | biological_process |
GO:0032259 | methylation | biological_process |
GO:0006281 | DNA repair | biological_process |
GO:0000280 | nuclear division | biological_process |
GO:0044380 | protein localization to cytoskeleton | biological_process |
GO:0072686 | mitotic spindle | cellular_component |
GO:0044424 | obsolete intracellular part | cellular_component |
GO:0044430 | obsolete cytoskeletal part | cellular_component |
GO:0005813 | centrosome | cellular_component |
GO:0005815 | microtubule organizing center | cellular_component |
GO:0005819 | spindle | cellular_component |
GO:0015630 | microtubule cytoskeleton | cellular_component |
GO:0005622 | intracellular anatomical structure | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0043226 | organelle | cellular_component |
GO:0043227 | membrane-bounded organelle | cellular_component |
GO:0043228 | non-membrane-bounded organelle | cellular_component |
GO:0043229 | intracellular organelle | cellular_component |
GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
GO:0043232 | intracellular non-membrane-bounded organelle | cellular_component |
GO:0008168 | methyltransferase activity | molecular_function |
GO:0004519 | endonuclease activity | molecular_function |
GO:0015631 | tubulin binding | molecular_function |
GO:0140097 | catalytic activity, acting on DNA | molecular_function |
GO:0008017 | microtubule binding | molecular_function |
GO:0018024 | histone-lysine N-methyltransferase activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00013647 | False | 5199 | lncRNA | 0.39 | 2 | 37538653 | 37544321 |
TCONS_00013648 | False | 4793 | lncRNA | 0.39 | 3 | 37538965 | 37544321 |
TCONS_00013649 | False | 4531 | lncRNA | 0.40 | 2 | 37538973 | 37544321 |
TCONS_00013652 | False | 4967 | lncRNA | 0.39 | 4 | 37538979 | 37544321 |
TCONS_00013651 | False | 5029 | lncRNA | 0.39 | 3 | 37538979 | 37544321 |
TCONS_00013650 | False | 5123 | lncRNA | 0.39 | 3 | 37538979 | 37544321 |
TCONS_00013655 | False | 4706 | lncRNA | 0.40 | 3 | 37538988 | 37544321 |
TCONS_00013654 | False | 4706 | lncRNA | 0.40 | 2 | 37538988 | 37544321 |
TCONS_00013653 | False | 4990 | lncRNA | 0.39 | 2 | 37538988 | 37544321 |
TCONS_00013656 | True | 2149 | lncRNA | 0.39 | 3 | 37541451 | 37544321 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_006159 | gphb5 | coding | upstream | 249544 | 37273010 ~ 37289109 (+) |
XLOC_006158 | esr2b | coding | upstream | 466095 | 37022601 ~ 37072558 (+) |
XLOC_006157 | frmd6 | coding | upstream | 540892 | 36958086 ~ 36997761 (+) |
XLOC_006156 | tmx1 | coding | upstream | 603738 | 36923052 ~ 36934915 (+) |
XLOC_006155 | atl1 | coding | upstream | 754253 | 36764715 ~ 36784400 (+) |
XLOC_006161 | phf3 | coding | downstream | 109530 | 37653851 ~ 37673576 (+) |
XLOC_006162 | BX005106.1 | coding | downstream | 129857 | 37674178 ~ 37674294 (+) |
XLOC_006163 | BX322660.1 | coding | downstream | 606196 | 38150517 ~ 38150637 (+) |
XLOC_006164 | zgc:171579 | coding | downstream | 669373 | 38213694 ~ 38222714 (+) |
XLOC_006165 | NA | coding | downstream | 681755 | 38226076 ~ 38284199 (+) |
XLOC_006149 | NA | non-coding | upstream | 1543486 | 35989155 ~ 35995167 (+) |
XLOC_006140 | CU681845.1 | non-coding | upstream | 2016477 | 35483618 ~ 35522176 (+) |
XLOC_006135 | NA | non-coding | upstream | 2553740 | 34752174 ~ 34984913 (+) |
XLOC_006175 | NA | non-coding | downstream | 2140150 | 39684471 ~ 39727464 (+) |
XLOC_006176 | NA | non-coding | downstream | 2300943 | 39845264 ~ 39873628 (+) |
XLOC_006137 | CR376850.2 | non-coding | upstream | 2569008 | 34969519 ~ 34969645 (+) |
XLOC_006136 | CR376850.1 | non-coding | upstream | 2655283 | 34883246 ~ 34883370 (+) |