AMCG00017333 (impdh2,LOC102785462)


Basic Information

Item Value
gene id AMCG00017333
gene name impdh2,LOC102785462
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53884651 ~ 53890648 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017333
ATGTATGATGAAGGGCTGGGGGCAGCAGTGTGCAATGGTGAAGGAGGAGGGGAGGCAGGGGGATCGGGtgactTTCTGATCCTGCCAGGGTACATCGACTTCACCGCCGACCAAGTGGACCTGACCTCGGCTCTGACCAGGCAGATCACCCTGAAGACTCCTCTGGTGTCGTCGCCCATGGATACGGTCACGGAGTCTGGAATGGCCATTGCCATGGCAGTAAGTGTGGAGGGGGCAGGGCCACTCACGGGTGGGATCGGGTTTATTCATCACAACTGTACCCCCGAGTTTCAGGCCAACGAGGTTCGCAAGGTCAAGCGGTACGAGCAGGGCTTCATCACGGACCCCGTGGTGATGAGCCCGCAGGAGCGTGTGCGTGACGTGTTTGAGGCCAAGGCGCGCCACGGCTTCTGTGGCATCCCCATCACGGACAGCGGGCAGATGGGTGGGCGGCTCGTGGGCATCATCTCCTCCCGCGACATCGACTTCCTGAAAGAGGAGGAGCACGACCTGCCGCTCAGCGAGGACCCGCGCAAGCAGCTGCTGTGTGGCGCGGCCATTGGTACGCACCGGGACGATCGCTACCGGCTGGACCTGCTCGCTCAGGCCGGCGTGGATGTGGTGGTGctgGACTCCTCTCAGGGTAACTCCATCTTCCAGATTGAGATGATCAGACACGTCAAGGAGAAGCACCCTCAGGTGCAGGTCATCGGGGGCAACGTGGTGACGGCAGCGCAGGCGAAGAACCTGATCGACGCCGGGGCGGATGCTCTGCGTGTGGGCATGGGCAGTGGCTCCATCTGCATCACACAGGAAGcgcccctgtctgtccctcctgACATAAAGCTCCACAGCCCCAAAACCCCGTCCACTGTAACAGGATACTCCATGCTGGCGTGCGGGCGGCCCCAGGCCACGGCGGTGTACAAGGTGTCGGAGTATGCGCGGCGCTTCGGCGTGCCCGTGATCGCGGACGGCGGCATCCAGACTGTGGGCCACATCGCCAAGGCCCTGGCCCTGGGTGCCTCCACCGtgaTGATGGGCTCTCTCTTGGCCGCCACCTCCGAGGCTCCAGGCGAGTATTTCTTCTCCGACGGGATCCGTCTGAAGAAGTACCGAGGCATGGGCTCGCTGGACGCCATGGACAAGAACCTGGGCTCGCAGACCCGCTACTTCAGTGAGTGTGATAAGATCAAGGTGGCCCAGGGCGTGTCGGGGGCCGTGCAGGACAAGGGGTCGATACACAAGTTCGTGCCGTACCTGCTGGCCGGCGTCCAGCACTCCTGTCAGGACATCGGGGCCAAGAGCCTCACACAGCTCAGGGCGATGATGTACTCGGGGGACCTGAAGTTCGAGAAGAGGACGGCCTCGGCTCAGGTGGAGGGAGGCGTCCACAGCCTGCACAGctACGAAAAGCGACTGTTCTAAATCTCTGTCCACGTCTTGGGAGGGGGATTagactgtgtgtgcgtgcatgtgtgtacgttggggggtgggggggtatatTTGCACAATTACCCCCCCCCCGCTCCCTCAATTGCCAAACActactccctctccctcctcctgctGCCGCCATTTCCTGTTTCCAGTCCAGTCTTCCCAGGACCTCCCAGTCCAGCCGTCaccaagagacagagagagagggagggggtgatggttaaaataaaatggtgtttTTGCAGTGCGTGTGTTTGGTGTGCGTGTCCCACAGGGAGGCGTGTGCGTGTCCGAGTGGCAGCGCAACCAAGTCCAGCCTTGAATTCCTAACtgacgtaaaaaaaa

Function

symbol description
impdh2 Predicted to enable IMP dehydrogenase activity; metal ion binding activity; and nucleotide binding activity. Acts upstream of or within circadian rhythm. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; mesoderm; muscle; and nervous system. Orthologous to human IMPDH2 (inosine monophosphate dehydrogenase 2).

NR:

description
PREDICTED: inosine-5'-monophosphate dehydrogenase 2 isoform X1

GO:

id name namespace
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00088 IMPDH, guaB; IMP dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017333 True 1785 mRNA 0.61 14 53884651 53890648

Neighbor

gene id symbol gene type direction distance location
AMCG00017327 NA coding downstream 20107 53857096 ~ 53864544 (-)
AMCG00017328 NA coding downstream 32677 53835650 ~ 53851974 (-)
AMCG00017329 NA coding downstream 56776 53825558 ~ 53827875 (-)
AMCG00017322 NA coding downstream 100927 53782826 ~ 53783724 (-)
AMCG00017321 NA coding downstream 103503 53737406 ~ 53781148 (-)
AMCG00017332 tmem110,LOC108435844,LOC106582935,LOC107656046,LOC107755187,LOC103359875 coding upstream 70173 53960821 ~ 53972368 (-)
AMCG00017338 NA coding upstream 83485 53974133 ~ 53986709 (-)
AMCG00017339 NA coding upstream 105457 53996105 ~ 54008920 (-)
AMCG00017337 NA coding upstream 167381 54058029 ~ 54062385 (-)
AMCG00017341 NA coding upstream 173721 54064369 ~ 54091597 (-)
G19875 NA non-coding downstream 15874 53864910 ~ 53868777 (-)
G19873 NA non-coding downstream 30023 53853983 ~ 53854628 (-)
G19741 NA non-coding downstream 465574 53418185 ~ 53419077 (-)
G19687 NA non-coding downstream 646242 53238206 ~ 53238409 (-)
G19663 NA non-coding downstream 874433 53009878 ~ 53010218 (-)
G19918 NA non-coding upstream 3688 53894336 ~ 53914876 (-)
G19920 NA non-coding upstream 6176 53896824 ~ 53897452 (-)
G19923 NA non-coding upstream 13647 53904295 ~ 54041033 (-)
G19957 NA non-coding upstream 164188 54054836 ~ 54055099 (-)
G19992 NA non-coding upstream 166237 54056885 ~ 54057927 (-)
G19824 NA other downstream 120275 53762998 ~ 53764376 (-)
G19808 NA other downstream 155768 53676083 ~ 53728883 (-)
AMCG00017313 NA other downstream 353520 53452118 ~ 53531131 (-)
G19730 NA other downstream 496942 53383340 ~ 53387709 (-)
AMCG00017299 NA other downstream 669315 53194833 ~ 53215336 (-)
AMCG00017334 NA other upstream 62646 53953294 ~ 53957473 (-)
G19950 NA other upstream 141991 54032639 ~ 54034161 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other upstream 226616 54117264 ~ 54154094 (-)
AMCG00017343 NA other upstream 237039 54127687 ~ 54145216 (-)
G20064 NA other upstream 476136 54366784 ~ 54368016 (-)

Expression


Co-expression Network