AMCG00017334


Basic Information

Item Value
gene id AMCG00017334
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53953294 ~ 53957473 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017334
gagggaggggctGGTTGTATTTTCTGTCCTGGGGAGGTGTTTAAATAGCAGACGTGGAGGGAGGGTCAGAAAGGAAGGAAGAGACAAACTGCAGAGAAGAATATCCCGGCCATCTTCCTCTGAGCAGCAGCTGTCAGTGTGGGGGGGTGTCTGTGGTGGGGCACTTGGCTCTGCTGTGGAGCCCCAGACATCATCGCTAATAATACCCCCTTACAACAgagtgagggaggagagagcgagagaggcaggcagggaggAGGCTCTGCCCACAGACTGACTCAGGCTCCGGGAGAGAGGGCTGACTCGCAGGCTGAACAGCTGGTATAAATCGTGGAGAGGGAGCTGCCCAGCCGATCCACTGTGCTGCCCTGACCTGCCTGCCTGCACCCCCGGACTCCTGCCCCCCGTCTGCAGCCATGTCTCAGCCCGGCgaagtgaagaagaagaagaggccGGTGATGAAGGAGGAGGACCTGAAGGGTGCCAAGGACAAGCTGGGCCTGAGAGGAGAGGTCAGGTCCAAGACCTACGAGGTCATGAAGGAATGTGAGCGTTCCGGCACGGTGGCCCCCTCCGTGTTCAGCGGGGCGCGGACAGGCACAGAGACGGTGTTTGAAAAGCCAGGACAGGACAGCAAGCCAGCCAAGAGCGTGTTTGGAAACTAGGCCGCAGGAcagcgtgggggggggggggggagtggcTGGCAATGACTGACAGTGACTGGcagtgccccccctccccccccacaggAGACATCCACACACAGGATGCCAGCACGATAACTAACACTGAgagggtgtctgtctgtctgtcttcactctgtgtgtgtttgtgtgtctgtctctctctctccctcgctccccGCCTCATCTCCCTctaattttatatgtatattttacacagtatatataaaatccctTTCATGTAGGACTTTCTCTTTTTATCTTCTGCTCCCAGTGTTTGTTCAAGGGTATCTTGCTTGTGTAGAGGGCTAGGTGCCAGAGTCAGAGTCAGGGAGGAACTGTGGGAAGTATTATTTCACTCTGTTCGGGGAGGGGGGGCACAGTGCAGCGTAATAAAGTCAATAAGGGAGTGTGGGAGCAGCTAGGGAGCTATACCTGGTCtgtgtgtatgagagtgtgtatatgtctttgtgtgtgtgtgtttgtggacaCGCGCGCAATCTTAATGAATTCACGGCTGTAAAGAACTTAATTAATGAGCCTAATTAAAG
>TU24740
TCAGTGTGGGGGGGTGTCTGTGGTGGGGCACTTGGCTCTGCTGTGGAGCCCCAGACATCATCGCTAATAATACCCCCTTACAACAgagtgagggaggagagagcgagagaggcaggcagggaggAGGCTCTGCCCACAGACTGACTCAGGCTCCGGGAGAGAGGGCTGACTCGCAGGCTGAACAGCTGGTATAAATCGTGGAGAGGGAGCTGCCCAGCCGATCCACTGTGCTGCCCTGACCTGCCTGCCTGCACCCCCGGACTCCTGCCCCCCGTCTGCAGCCATGTCTCAGCCCGGCgaagtgaagaagaagaagaggccGGTGATGAAGGAGGAGGACCTGAAGGGTGCCAAGGACAAGCTGGGCCTGAGAGGAGAGGTCAGGTCCAAGACCTACGAGGTCATGAAGGAATGTGAGCGTTCCGGCACGGTGGCCCCCTCCGTGTTCAGCGGGGCGCGGACAGGCACAGAGACGGTGTTTGAAAAGCCAGGACAGGACAGCAAGCCAGCCAAGAGCGTGTTTGGAAACTAGGCCGCAGGAcagcgtgggggggggggggggagtggcTGGCAATGACTGACAGTGACTGGcagtgccccccctccccccccacaggAGACATCCACACACAGGATGCCAGCACGATAACTAACACTGAgagggtgtctgtctgtctgtcttcactctgtgtgtgtttgtgtgtctgtctctctctctccctcgctccccGCCTCATCTCCCTctaattttatatgtatattttacacagtatatataaaatccctTTCATGTAGGACTTTCTCTTTTTATCTTCTGCTCCCAGTGTTTGTTCAAGGGTATCTTGCTTGTGTAGAGGGCTAGGTGCCAGAGTCAGAGTCAGGGAGGAACTGTGGGAAGTATTATTTCACTCTGTTCGGGGAGGGGGGGCACAGTGCAGCGTAATAAAGTCAATAAGGGAGTGTGGGAGCAGCTAGGGAGCTATACCTGGTCtgtgtgtatgagagtgtgtatatgtctttgtgtgtgtgtgtttgtggacaCGCGCGCAATCTTAATGAATTCACGGCTGTAAAGAACTTAATTAATGAGCCTAATTAAAGTACAGCGATGGCtttggtgtttattttgtatcttgtttttgtttaatactCTCTGTATTTCTTACATGgcttattgtattaataaatcataaataattgcaaaatagtaaatgctttatttattca

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0061061 muscle structure development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017334 True 1234 mRNA 0.55 3 53953420 53957473
TU24740 False 1227 TUCP 0.52 3 53953294 53957340

Neighbor

gene id symbol gene type direction distance location
AMCG00017333 impdh2,LOC102785462 coding downstream 62646 53884651 ~ 53890648 (-)
AMCG00017327 NA coding downstream 88750 53857096 ~ 53864544 (-)
AMCG00017328 NA coding downstream 101320 53835650 ~ 53851974 (-)
AMCG00017329 NA coding downstream 125419 53825558 ~ 53827875 (-)
AMCG00017322 NA coding downstream 169570 53782826 ~ 53783724 (-)
AMCG00017332 tmem110,LOC108435844,LOC106582935,LOC107656046,LOC107755187,LOC103359875 coding upstream 3348 53960821 ~ 53972368 (-)
AMCG00017338 NA coding upstream 16660 53974133 ~ 53986709 (-)
AMCG00017339 NA coding upstream 38632 53996105 ~ 54008920 (-)
AMCG00017337 NA coding upstream 100556 54058029 ~ 54062385 (-)
AMCG00017341 NA coding upstream 106896 54064369 ~ 54091597 (-)
G19918 NA non-coding downstream 38418 53894336 ~ 53914876 (-)
G19920 NA non-coding downstream 55842 53896824 ~ 53897452 (-)
G19875 NA non-coding downstream 84517 53864910 ~ 53868777 (-)
G19873 NA non-coding downstream 98666 53853983 ~ 53854628 (-)
G19741 NA non-coding downstream 534217 53418185 ~ 53419077 (-)
G19957 NA non-coding upstream 97363 54054836 ~ 54055099 (-)
G19992 NA non-coding upstream 99412 54056885 ~ 54057927 (-)
G20066 NA non-coding upstream 412279 54369752 ~ 54370666 (-)
G20078 NA non-coding upstream 495148 54452621 ~ 54454276 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding upstream 537462 54494935 ~ 54498038 (-)
G19824 NA other downstream 188918 53762998 ~ 53764376 (-)
G19808 NA other downstream 224411 53676083 ~ 53728883 (-)
AMCG00017313 NA other downstream 422163 53452118 ~ 53531131 (-)
G19730 NA other downstream 565585 53383340 ~ 53387709 (-)
AMCG00017299 NA other downstream 737958 53194833 ~ 53215336 (-)
G19950 NA other upstream 75166 54032639 ~ 54034161 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other upstream 159791 54117264 ~ 54154094 (-)
AMCG00017343 NA other upstream 170214 54127687 ~ 54145216 (-)
G20064 NA other upstream 409311 54366784 ~ 54368016 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other upstream 570311 54527784 ~ 54535543 (-)

Expression


Co-expression Network