AMCG00017346 (LOC106583208,LOC106565550)


Basic Information

Item Value
gene id AMCG00017346
gene name LOC106583208,LOC106565550
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54264090 ~ 54276339 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017346
ATGGAAGTAGCTGCCGACCAGCCGCGGTGGATGACGCACCACCACCACGTTTTGAACGGACAGCACCCGGACTCTCACCACCCAGGGCTGGCCCACAACTACATGGAGCCCGCGGCGCAGCTGCTGCCCCCGGACGAGGTGGACGTGTTCTTCAACCACCTGGACTCGCAGGGCAACCCCTACTACCCCAACCCGGCGCACGCCCGGGCCCGGGTGTCCTACAGCCAGGCGCACGCTCGCCTCACCGGGAGCCAGGTCTGCCGGCCCCACCTCATCCACAGCCCGGGGATCCCGTGGCTAGACAGCGGCAAGGCAGCGCTCTCCGCTGCCCACCATCACAACGCCTGGGCGGTGAGCCACTTCTCCAAGCCCGGCCTGCACCCCGGCAGCTCCGGGGGCCCGGGGGGGCTCTCGGCGGTGTACACGGGCAGCAGCTCCGCCAGCACGGGCTCGGTGTCGTCGCTCACCCCGGCCTCGCACTCCAGTCCTCACCTCTACagcttcccccccaccccgcccaAGGACGTGTCCCCCGACCCCGGGGCCGCCTCTCCGTCCTCGGCCTCCGCCCGGCTGGACGAGAAGGAGTCCATTAAGTACCAAGTGTCTCTATCCGAGGGAATGAAGATGGAGGGCTCCAGCCCGCTGCGGACCAGCCTGGCCTCCATGGGCGCCCAGACCCCCTCCACACACCACCCCATCCCGACCTACCCCTACTCCCTGCCCTCCGCGCACGACTACGGCGGCAGCCTCTTCCACCCGGGCAGCCTGCTCGGCGGCGCCTCGTCCAGCTTCACGccgaaaatgaaaagcaaaacccGGTCGTGTTCAGGTGAGTTTGGCTCTAAAGTGTTCGGTGTTGAAGTGAACCGCCCGCTGACCATGAAGAAGGAGGGCATCCAGACGCGGAACCGCAAGATGTCCAACAAGTCCAAGAAGGGCAAGAAGGGCGGGGACGGGTTTGAGGAGCTGTCCAAGTGCATGCAGGACAAGCAGTCCCCCTTCAGCGCGGCCGCCCTGGCCGGACACATGAGCCACATGGGCCACCTGCCCCCATTCAGCCACTCCGGACACATCctgcccacccccacccccatccacCCGTCCTTCGCACACCCACACCACTCCAGCATGGTCACGGCCATGGGCTGA

Function

NR:

description
PREDICTED: GATA-binding factor 2-like isoform X1

GO: NA

KEGG:

id description
K17894 GATA2; GATA-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017346 True 1152 mRNA 0.67 3 54264090 54276339

Neighbor

gene id symbol gene type direction distance location
AMCG00017342 ruvbl1,LOC107721190,LOC107667375,LOC107568195 coding downstream 112242 54147224 ~ 54151848 (-)
AMCG00017344 NA coding downstream 147806 54107703 ~ 54116284 (-)
AMCG00017345 NA coding downstream 166967 54095864 ~ 54097123 (-)
AMCG00017341 NA coding downstream 172493 54064369 ~ 54091597 (-)
AMCG00017337 NA coding downstream 201705 54058029 ~ 54062385 (-)
AMCG00017352 LOC100305111 coding upstream 40754 54317093 ~ 54323453 (-)
AMCG00017353 NA coding upstream 67062 54343401 ~ 54352579 (-)
AMCG00017360 prkar2aa,LOC103384990,LOC107669629,LOC107717523,LOC107556498,LOC105906428 coding upstream 279018 54555357 ~ 54558595 (-)
AMCG00017362 prkar2aa,LOC108265715,LOC107679546,LOC107591783,LOC107711958,LOC105906428 coding upstream 293932 54570271 ~ 54570558 (-)
AMCG00017359 slc25a20 coding upstream 296086 54572425 ~ 54578093 (-)
G19992 NA non-coding downstream 206163 54056885 ~ 54057927 (-)
G19957 NA non-coding downstream 208991 54054836 ~ 54055099 (-)
G19923 NA non-coding downstream 223057 53904295 ~ 54041033 (-)
G19918 NA non-coding downstream 349214 53894336 ~ 53914876 (-)
G20066 NA non-coding upstream 93413 54369752 ~ 54370666 (-)
G20078 NA non-coding upstream 176282 54452621 ~ 54454276 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding upstream 218596 54494935 ~ 54498038 (-)
G20118 NA non-coding upstream 233897 54510236 ~ 54510488 (-)
G20122 NA non-coding upstream 302926 54579265 ~ 54579718 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other downstream 109996 54117264 ~ 54154094 (-)
AMCG00017343 NA other downstream 118874 54127687 ~ 54145216 (-)
G19950 NA other downstream 229929 54032639 ~ 54034161 (-)
AMCG00017334 NA other downstream 306617 53953294 ~ 53957473 (-)
G19824 NA other downstream 499714 53762998 ~ 53764376 (-)
G20064 NA other upstream 90445 54366784 ~ 54368016 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other upstream 251445 54527784 ~ 54535543 (-)
AMCG00017366 LOC105899076 other upstream 362084 54638423 ~ 54651864 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other upstream 424231 54700570 ~ 54723791 (-)
G20237 NA other upstream 560758 54837097 ~ 54838491 (-)

Expression


Co-expression Network