AMCG00017348


Basic Information

Item Value
gene id AMCG00017348
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54366736 ~ 54372123 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017348
ACGTGCGCGTCCACGCACGACTCCCCTTTGCCGAGCACGGCCCACGCCATCGACGTGCGCGCCCCCGTCACCCTCAGTGCGGAGACTCGGACTCGGAAATGGCTGCTTCTGTGTGTCGCGCCGGCGGCCTCGTCGGACGGGCTGTGGGCCGAGTGAGGACCGTGAGTAGCGCTGCTACAATTGTAAACCTTGAGCCGGGGACCCGACCCGGCTCGGTACTCGGCACTGCCCGTCCGAAACTCCCTCTGAAAGTCACCTTCCTGCGCCGGGCGGCCCGGCCCGTGTCTCGCCGCGGCGTAGGAAGGTCACCGAGACGGAGGGGTTATTGAACACGGCGGGCCGGGGGGCTGGTTAAACCCGGCGTTTCACCCGTATCGGCTCCCCGGGACACGGCCGTGTTTGGGCGGTATAGAGAGCAGTCTGCAGCCGGCAGCGCAGCAAGGtcacagtcagacagacagacggacggacggacagacagcGCCGGGGCTGTGCAGTCAAGTCCTGGTTCCGTGTGTTTGCATTGCGGCCTCACTGGGCTCCAGGGCTGCGGGGCGCGTTTTACTCTGGACCCCAGCCCGGCTCCTGAAACAGCCCCACTAAAGCAGCCCTCCGAGTGCGATACAGACAGCAACACGCCCGCTGGCATCGCCGCTCCGCCTCCCTGTCTGTCTTTAACCTGCGGAGCCTCTGTGTGAGATCCGCGGCGGACCTGTGGGTGAGGCTGGGCTGAGAGCCGCAGTGTGTCGGGGTGCGGGACTCACTCACACCCACTGGAGCTTCCCGACCCACAGCTTTTGCTACTACAGAGACCTGGAAGAATACttcttaatattatatttttaagcatgtttttgctctctgtgtccctctcctaaagtctgtctctgtgtctccccaTCTTAATACGTCTCCCTCTCCTaatgtccctctctctgtgtctgcctGTGCAGCCGGCCCTGCTGTGTCTGCGCCGAGGACAGTCGGGCTTGTCATATGCGCAGTGTCTGCGCAGCTCCCCGGAGACGCAGCTCACCACACTGGACAACGGCCTCCGCGTCGCCTCCCAGGAGACTGGCCACCCCACCTGCACTGTGGGCGTGTGGATCAATGCAGGCAGCCGCTACGAGACCGAGAGGAACAATGGCTGCGGCTTCTTCCTGGAGCACATGGCCTTCAAGggCACTAAGAAGCTGCCCCAGGCTGCCCTGGAGCAGGAGGTGGAGTCGATGGGAGCCCATCTGAGTGCCTACACCTCCAGAGAGATGAGCGCCTACTACATGAAGGCTCTGTCCCAGGACCTGCCCAGAGCGGTGGAGCTGCTGTCGGAGGTGGTGGGCAGCGCGGCGCTGGGGGACTCGGACGTGGAGCGCCAGCGGGCCGTGGTTCTgcgggagctggaggaggcggAGTCAGGGCTGCAGGAGGTGTGTCTGGACCTGCTGCACGCCACGGCTTACCAGGGCACCCCCCTCGGCCAGTCGCCCCTCGGGCCCTCCGACAACGCCAGGACCCTGACCCGCCAGGACCTGCTGGAGTACATCAGCTGTCACTACAAGGCCCCTCGCATGGTGCGAGTGCGGGATGATGCGATGCCTCTGGCCCACGTGGCGATTGCGGTGGAGGGGGCCGGCTGGGAAAGCCCCGACATCGTGCCCCTCATGATTGCCCGCACGCTGATCGGCAACTATGACGTCACCTACGGGGGCGACAAGAACCTGAGCAGCCGCCTGTCCCAGCTGGCGGTGCAGCACGGCCTGTGCCACAGCTTCCAGTCCTTCAACACCTGCTACTCCGACACCGCGCTGTTCGGGATTCACTTCGTCACCGACAAGCACCACATCGAGGACATGCTGCACTTCGCTCAGGCCCAGTGgatgaTGCTGTGTACCACAGTGACAGAGAGCGATGCTGTGACTCCCAAACTCCTGCGTGACGTCTGCTCCAAGTACATCTACGACAAGTGCCCGGCCCTGGCAGCTGTGGgcccgATCGAGCAGCTCCCGGACTACAACCGGATCCGCAGTGCAATGTACTGGCTGAGGTTCTAACTCTACAATCGTCCTCCGATACAATGACCGCCCCCCCGTCGCTGTCCCTGCCAGCCCCCccgctctctcctctcttctcagACACCGGGCATTGTTCGGTGTCTgtctcccccccctcctccgCCCAGCGTGGGTACCGGTCTCCCAGATCGATCACGTGCTGCTCGGGGGTCCGTAGcgttgttttgattttgtatatttgatttaatattattgtctttttttgttttgttttattgaaactTGTTTTCCAATTgattgggtggggggggcagggaagacacaaccccccaccccccaccccacaaacacacacaacaaaaataaaggacTTCCACTGATGTGAGCGTCTCAGACCCGTTGTCGGTTCGGTCTACGTTGCTGTGGACCCGAGTGAGCGGACGGTTTGATTGTGGGGGGGGCGCCGTCCCGCCGGCTGTGTGTGATTGACAGGCCGTGTCGGAGCCTCTCCGTTTAAACCATCGGGCACAACGTCGAGATGAAGAGACATTAAAATAACTTCCAAACGGGATGCTGGTGTGGCGGTTGTTTGGAGATGTTTGTGGCCACAGTGTGCTGTCTTCCTTCCACCAGGGGGTGCACAGCGTTCAGTCCAAACCTGTTGAACCAAAATCAAAAGGGCTGTGcttgggaaataaataataatgatcaagCGTTTCTCACAGCCTGGCAATGGCTGACTGCGATCTCTTTAAAACACGGTGAAGATCTTGGATCGTGCCACAAAATACACTTGCTAACATTCAGCATTAaattgcatattaaaataatcaatcgTGCCATTGAAGGCTTTTTAAAAGTGTCAAGGAAATAAAACGTGTCCTACGGGACCCTGGCCCCAGTATGAGGCTGAGACACGGTTGTCTTCTACACTGTGGTAAAAGTGCGGTAAGGTGTAGTCGGGTGAAGAGTGGTAAACACGTGGTGAAGTATAG

Function

GO: NA

KEGG:

id description
K07263 pqqL; zinc protease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017348 True 3007 mRNA 0.59 10 54366736 54372123

Neighbor

gene id symbol gene type direction distance location
AMCG00017351 NA coding upstream 608 54360009 ~ 54366128 (+)
AMCG00017350 ARPC4,arpc4,LOC103385929,LOC107094019,LOC107753787 coding upstream 8747 54352706 ~ 54357989 (+)
AMCG00017354 NA coding upstream 23689 54335940 ~ 54343047 (+)
AMCG00017349 rab7a,rab7,LOC108254780,LOC106518505,LOC105017315,LOC107093905 coding upstream 31725 54325336 ~ 54335011 (+)
AMCG00017347 NA coding upstream 158015 54205132 ~ 54208721 (+)
AMCG00017356 NA coding downstream 17209 54389332 ~ 54422632 (+)
AMCG00017355 NA coding downstream 89786 54461909 ~ 54469135 (+)
AMCG00017361 LOC105927081,LOC106929785,LOC108235569,LOC106517999,LOC103143233,LOC103465231,LOC106950531,LOC107094004 coding downstream 121454 54493577 ~ 54495259 (+)
AMCG00017363 NA coding downstream 258515 54630638 ~ 54632572 (+)
AMCG00017364 NA coding downstream 294757 54666880 ~ 54673342 (+)
G20028 NA non-coding upstream 20959 54343402 ~ 54345777 (+)
G20006 NA non-coding upstream 195313 54171215 ~ 54171423 (+)
G19958 NA non-coding upstream 308816 54056860 ~ 54057920 (+)
G19899 NA non-coding upstream 325703 53948758 ~ 54041033 (+)
G20086 NA non-coding downstream 180017 54552140 ~ 54555325 (+)
G20136 NA non-coding downstream 243118 54615241 ~ 54615448 (+)
G20177 NA non-coding downstream 360897 54733020 ~ 54737869 (+)
G20218 NA non-coding downstream 423373 54795496 ~ 54797145 (+)
G19961 NA other upstream 300549 54064358 ~ 54066187 (+)
G19956 NA other upstream 311561 54054800 ~ 54055175 (+)
G19896 NA other upstream 419118 53939537 ~ 53947618 (+)
AMCG00017331 NA other upstream 430254 53915125 ~ 53936482 (+)
G19860 NA other upstream 502018 53864108 ~ 53864718 (+)
AMCG00017357 NA other downstream 51430 54423553 ~ 54452054 (+)
G20099 NA other downstream 155629 54527752 ~ 54529204 (+)
G20085 NA other downstream 201351 54573474 ~ 54582399 (+)
G20156 NA other downstream 291188 54663311 ~ 54664526 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other downstream 436343 54808466 ~ 54809106 (+)

Expression


Co-expression Network