AMCG00017349 (rab7a,rab7,LOC108254780,LOC106518505,LOC105017315,LOC107093905)


Basic Information

Item Value
gene id AMCG00017349
gene name rab7a,rab7,LOC108254780,LOC106518505,LOC105017315,LOC107093905
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54325336 ~ 54335011 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017349
AGGAAGTGAGAGAACGGGTCGAGTCCgcggaggagaagaagaagaagaagaagcagcagcggagagaaaaagaagagacAGAGCGGGGCATCGGCGAGGAATAACGGTTATATATCTGCCACGCAAAGACCTGCCCCCACACCTCACCGACCCCGCAGGAGAGACATCCTTATTCCGGGGGTGTAAAGTCGCAGGAAGACACGGGCAGCAGAGCGGACTGAATGCCGTGTTCATTGCAGCGGGAATAAAACCCGACTCCGCTCGTATTTTCATCAGCACCGGCTTTGCTCCACGTCGCCCCAGTCGAGAGAAGCCCACCGTGCCGCTGGTGGGGGCCCGAGAGACCGCAGAGCTCTGTGACCCGCCGCACAACCCGCACGACTTCCTCTGGGGCTGCGAGAGAACCAGctgTAACACAATGACCTCCAGGAAGAAGGTGCTACTGAAGGTGATCATTCTGGGCGACTCAGGTGTGGGTAAGACCTCTCTGATGAACCAGTACGTCAATAAGAAGTTCAGTAACCAGTACAAAGCCACAATAGGAGCAGACTTCCTGACGAAGGAGGTGATGGTGGATGACCGCCTTGTCACCATGCAGatCTGGGACACGGCTGGGCAGGAGCGCTTCCAGTCTCTGGGCGTGGCGTTCTACCGCGGCGCCGACTGCTGCGTCCTGGTGTTCGACGTCACAGCACCCAACACCTTCAAGACTCTGGACAGCTGGCGGGACGAGTTCCTGATCCAGGCGAGCCCGCGCGACCCCGAGAACTTCCCCTTCGTGGTCCTGGGGAACAAGATCGACCTGGAGAACAGACAGgTGACGACTAAGCGAGCCCAGGCCTGGTGTCAGAGCAAGAACAACATCCCGTACTTCGAGACCAGCGCCAAGGAGGCCATCAACGTGGAGCAGGCCTTCCAGACCATCGCGCGCAACGCCCTCAAGCAGgagaCGGAGGTGGAGTTGTACAACGAATTCCCGGAGCCGATCAAACTGGACAAGAACGAGCGTGCGCGTCCGTCGGCGGAGACCTGCAGCTGCTGAGGGGCTGGGGGTCTGAGAGCACACCCCCCCCACTCGGCCTTTCCCCCTCCTTCCCTTTGGCACCCCCCCAACCCTGGTGTCCCCCCATCACGatcactgctctctctctctctctctctctgtctctctctcttgtggtTAAACCTTTTAAAGTCAAGAGCAGGTTTCTGCCCTCcgttgtactgtatatataaacacacacacacacacacgcgcacccCCACCCCAGAGGCAATTAACCCTTTACACCCTGTACCCCAATCCCTATGACGCACTTACTTTTTCATGCTCGCTGTCCGTCCCCCACCAGTCCTCTGGAAACGACACACTTGTtacactctttctttctctctcacctcctcCGCTCCCTCTCCTCCCGCCCCCTCTTCTGCTCTCACGCCGGCCCCCTCACCGTCCTCACCGTCCTCCCCGCCGGCCCCCAAGTTCTCATGAGCAAAACTGTTCCATCGATGagttggaaaaagaaaaggaatgcGAAGATAAAACGTCACACAgatccacagagagagagagagaaagaaatgtatacagGGAACGCAGGAGATGCATTTCATTGTTCTTGTTGGATTACTACTATAAATAGTACTATTGctcttactactactaatactactagaCCTATTTATACTACTGTGTTGCCTTCTGTTGTCTTATCAGCCGTGTGTGGCGAAACATTGAGCCTGTGCcgatccctccctctctctgaagTGAAGGCCCTGTCCTCTCTGTCcacagtctgtctctgtctgtccgttTCTCTTTTCCCTGTAGGTTGCTCAGGTTGGCGATGGATTTGTTAAATGAAAATGCTTGATACTCCTTTTAACTGATCTGATAATTACCTTTTACAGTCTGTAacttgtacacacacacacacacacacacacacgagaatAAAAGGATGAAAAAgtcaaaaatatacacacaaaaaatcttGTAATACAACATggtattattaattacataataaatGCACAGCCAATgacattgtttaaaaagaagTATTTgggtttcaaaataataatgataataaaaggTTCTTGAATACA

Function

symbol description
rab7a Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within endosomal transport. Located in late endosome. Is expressed in neural crest. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).
rab7 Predicted to enable several functions, including guanyl ribonucleotide binding activity; retromer complex binding activity; and small GTPase binding activity. Involved in lipophagy. Acts upstream of or within with a positive effect on establishment of vesicle localization. Located in several cellular components, including late endosome membrane; lipid droplet; and phagophore assembly site membrane. Is extrinsic component of lysosome membrane. Is active in lysosome. Is expressed in limb mesenchyme and lung mesenchyme. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-7a isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005770 late endosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07897 RAB7A; Ras-related protein Rab-7A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017349 True 2112 mRNA 0.52 6 54325336 54335011

Neighbor

gene id symbol gene type direction distance location
AMCG00017347 NA coding upstream 116615 54205132 ~ 54208721 (+)
AMCG00017340 NA coding upstream 154826 54153607 ~ 54170510 (+)
AMCG00017336 NA coding upstream 268671 54036514 ~ 54056665 (+)
AMCG00017335 LOC108435819,LOC108440644,LOC107712078,LOC107721176 coding upstream 292299 54013561 ~ 54033037 (+)
AMCG00017324 NA coding upstream 441832 53876586 ~ 53883504 (+)
AMCG00017354 NA coding downstream 929 54335940 ~ 54343047 (+)
AMCG00017350 ARPC4,arpc4,LOC103385929,LOC107094019,LOC107753787 coding downstream 17695 54352706 ~ 54357989 (+)
AMCG00017351 NA coding downstream 24998 54360009 ~ 54366128 (+)
AMCG00017348 NA coding downstream 31725 54366736 ~ 54372123 (+)
AMCG00017356 NA coding downstream 54321 54389332 ~ 54422632 (+)
G20006 NA non-coding upstream 153913 54171215 ~ 54171423 (+)
G19958 NA non-coding upstream 267416 54056860 ~ 54057920 (+)
G19899 NA non-coding upstream 284303 53948758 ~ 54041033 (+)
G19887 NA non-coding upstream 363498 53959463 ~ 53961838 (+)
G19889 NA non-coding upstream 410459 53912818 ~ 53914877 (+)
G20028 NA non-coding downstream 8391 54343402 ~ 54345777 (+)
G20086 NA non-coding downstream 217129 54552140 ~ 54555325 (+)
G20136 NA non-coding downstream 280230 54615241 ~ 54615448 (+)
G20177 NA non-coding downstream 398009 54733020 ~ 54737869 (+)
G20218 NA non-coding downstream 460485 54795496 ~ 54797145 (+)
G19961 NA other upstream 259149 54064358 ~ 54066187 (+)
G19956 NA other upstream 270161 54054800 ~ 54055175 (+)
G19896 NA other upstream 377718 53939537 ~ 53947618 (+)
AMCG00017331 NA other upstream 388854 53915125 ~ 53936482 (+)
G19860 NA other upstream 460618 53864108 ~ 53864718 (+)
AMCG00017357 NA other downstream 88542 54423553 ~ 54452054 (+)
G20099 NA other downstream 192741 54527752 ~ 54529204 (+)
G20085 NA other downstream 238463 54573474 ~ 54582399 (+)
G20156 NA other downstream 328300 54663311 ~ 54664526 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other downstream 473455 54808466 ~ 54809106 (+)

Expression


Co-expression Network