AMCG00017352 (LOC100305111)


Basic Information

Item Value
gene id AMCG00017352
gene name LOC100305111
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54317093 ~ 54323453 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017352
CGACGAGTGCAGGGAAGAGTGAGGCCTCGTCTCTTCAGtcattaaaaactaataattggattcaaaaaataaattaaaccgaaACAAACGCAACACATTGTGGGTCTGAAGTTGCTCTTTGACTCGGCCTGCAGTGGAGCTGAACATTAACTTAAAATACTCAAATCTGAAGCCATGCGACTCACCGCAGTTTCCTACGCCTTCACCGGCGTCCTGGCGCTCCTGCTCGGGCTGTGCCTTGCCGAGCCGTCCCTGGTGAACGAGGAGGTGAAGCGCACGGTGGACCTGAGCTCCCACCTCGCCAAGATCACGGCCGAGGTGCTGCTCTCCAACGCGGGCGGCGCGGCGGCGCACAGCTTCGTGGTGGCGGTGGAGCCGGAGCTGGCGGATCACCTCGCCTACATCGGGGTCACGgtgaagggagaggaagaggaggacagTGCTCTGGAGCTGCATGAGACCACGATTAAAGGTCAAAGCGGTAAGTTCTTCCGGGCGCAGTTCCCCTCCGCGCTGGCAGGGGGCGCCAAGCTGCGCGTGTCGGTGGAGACGGTGTTCACGCACGTGCTGCGGCCCTTCCCCTCGCAGATCACGCAGGCCGAGCGCCAGCTGGTGGTGTTCGAGGGCAACCACTTCCTGTTCTCGCCCTACGCTACCCGTGCCCAGACGACCCGCGTGCGCCTGGCCTCCAAGAACGTGGAGAGCTACAGCAAGCTGGGCGGCCCAAGCAAGAGCGACGAGGTCATCGAGTACGGGCCCTTCCGCGACACCGCGCCCTTCAGCAAGGACCCCATGAAGATCCACTACGAGAACAACTCGCCCTTTCTGACGATCAGCAGCATCACGCGCACCGTGGAGGTGTCCCACTGGGGCAACATCGCCGTGGAGGAGACCATCGACCTGCGGCACACAGGCGCCGAACTGCGCGGCCCGTTCTCCCGCTACGACTACCAGCGCCAGTCTGAGAGTGGCATCTCCTCTGTCAAGTCGTTCAAGacaaTCCTGCCGGCGGCGGCGCAGGACGTTTACTACCGCGACGAGATCGGGAACATCTCCACGTCCCACCTGCAGGTGCTGGAGGACTCCGTGGAAGTGGAGATCCGGCCGCGCTTCCCACTGTTCGGGGGCTGGAAGACGCATTACATCATCGGCTACAACCTGCCCAGCTACGAGTACCTGTACACGCTGGgcgATCAATACGCTCTGAAGATGCGTCTGGTTGACCACGTGTTTGATGACCAGGTGATCGACACCCTGACCGTCAAGCTCATCCTGCCAGAGGGGGCCAGgaGCATCCACGTCGAGGCCCCGTACCCCATCGAGCGCGAGCCGGACCAGCTGCACTACACCTACCTGGACACCTTCGGCCGGCCCGTCGTAGTGGCGACCAAGAACAACCTGGTGGAGCAGCACATCCAGGACATGgtggtCCACTACAACTTCAATAAGATCCTGATGCTGCAGGAGCCTCTGCTGGTCGTGGGTGCCTTCTACATCCTGTTCTTCACAGTCATCGTCTACGTGCGCCTGGACTTCTCCATCACCAAGGACCCGGTGGCCGAGGTGCGCATGAAGGTGGCGTCGCTGACAGAGCAGGTGCTGACGCTGGTGAACCGGCGGCTGGGCGTGTACCGGCACTGCGACGAGGCTGTGTCCGAGATCCAGAAGCTGGACGGGCAGGTGAAGGAGCTGGCGTGGCGCGCCGTGCAGGAGGCCGAGCGGCTGGTGGGTGGGAAGCTGAAGAAGGAGGCGTACCTGGAGAGCGAGCGGCAGCTGTCCTCGCGCCGGCAGGAGCTGGTGGCCCGGATCGACACCCTGCTGGACGTGCTGTAGGCCCGCTGCACAACTCTCGATACACAGACCACACACGGCAAATACCATACAGACTACAGCACACGCAAAAGAGAAcacatgcaacacacacacacacacacacacacacacctcagccCAGGCCAGGTGAACTCAGCCTGCCAGCCCCCCCACACTGTTGGCCCCagtcaattaagaaattaaacatgttaattGGAGAGAGACCCTGTCACTGACCTGCCTTACACACCTGTGGCCAACTGCCAGCTGTCCGTGGCGGAGGATGTGGGGTCCGGGGTGGGGGGCCGTGCCTCTGGTCAGGAGGCGCTTGGTTTTAAgcgtttgtttttgtaaactgCGTTTTGCTGCAGTCGCGTGGTTTCGGCTTTCAatgcgatttttttttttttttttNNNNNNNNNNCCAGTCCCGCGCTCCCCTCTGTTCTCCAGATCACAGCACCGACCgctgctccctccccctcctctcctcatcTTACAGCTTATATAGGATGAGCTGCAGATActctaaaataaatcaatgcttttctttttttgggctGCATCCCCCGCCCCACTGCCTCCCTCGGGCTCGGAGCCGCGGCAGAGCTCAGTCCAGCCGAGTCCGTCAGCGGGGAGGGGTGCCACCTGATCCCCCTAAACAAGTCACTTTGAGACATTTTTAttctaaactttttttgttttaagtttggtAGTAGTTAGAGATTGGAGTGACAGTTGGGaggtctgtttgtctgtctgtaagTGCCCTGTCATGACTCctcttgattgtttttgtttatttgtatgaagCCGCACTGGGCCGAGAGCACCAGACAGAGATtagtggggggggcgggggtctCCTGCAGCAGTACAGGGTTcag

Function

NR:

description
ribophorin I, partial

GO: NA

KEGG:

id description
K12666 OST1, RPN1; oligosaccharyltransferase complex subunit alpha (ribophorin I)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017352 True 2699 mRNA 0.59 10 54317093 54323453

Neighbor

gene id symbol gene type direction distance location
AMCG00017346 LOC106583208,LOC106565550 coding downstream 40754 54264090 ~ 54276339 (-)
AMCG00017342 ruvbl1,LOC107721190,LOC107667375,LOC107568195 coding downstream 165245 54147224 ~ 54151848 (-)
AMCG00017344 NA coding downstream 200809 54107703 ~ 54116284 (-)
AMCG00017345 NA coding downstream 219970 54095864 ~ 54097123 (-)
AMCG00017341 NA coding downstream 225496 54064369 ~ 54091597 (-)
AMCG00017353 NA coding upstream 19948 54343401 ~ 54352579 (-)
AMCG00017360 prkar2aa,LOC103384990,LOC107669629,LOC107717523,LOC107556498,LOC105906428 coding upstream 231904 54555357 ~ 54558595 (-)
AMCG00017362 prkar2aa,LOC108265715,LOC107679546,LOC107591783,LOC107711958,LOC105906428 coding upstream 246818 54570271 ~ 54570558 (-)
AMCG00017359 slc25a20 coding upstream 248972 54572425 ~ 54578093 (-)
AMCG00017365 arih2,LOC102785176 coding upstream 256617 54580070 ~ 54587525 (-)
G19992 NA non-coding downstream 259166 54056885 ~ 54057927 (-)
G19957 NA non-coding downstream 261994 54054836 ~ 54055099 (-)
G19923 NA non-coding downstream 276060 53904295 ~ 54041033 (-)
G19918 NA non-coding downstream 402217 53894336 ~ 53914876 (-)
G20066 NA non-coding upstream 46299 54369752 ~ 54370666 (-)
G20078 NA non-coding upstream 129168 54452621 ~ 54454276 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding upstream 171482 54494935 ~ 54498038 (-)
G20118 NA non-coding upstream 186783 54510236 ~ 54510488 (-)
G20122 NA non-coding upstream 255812 54579265 ~ 54579718 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other downstream 162999 54117264 ~ 54154094 (-)
AMCG00017343 NA other downstream 171877 54127687 ~ 54145216 (-)
G19950 NA other downstream 282932 54032639 ~ 54034161 (-)
AMCG00017334 NA other downstream 359620 53953294 ~ 53957473 (-)
G19824 NA other downstream 552717 53762998 ~ 53764376 (-)
G20064 NA other upstream 43331 54366784 ~ 54368016 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other upstream 204331 54527784 ~ 54535543 (-)
AMCG00017366 LOC105899076 other upstream 314970 54638423 ~ 54651864 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other upstream 377117 54700570 ~ 54723791 (-)
G20237 NA other upstream 513644 54837097 ~ 54838491 (-)

Expression


Co-expression Network