AMCG00017353


Basic Information

Item Value
gene id AMCG00017353
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54343401 ~ 54352579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017353
CacaactttaaaacacaattatacacaTGCATGTCCCCCCTCACAACGCTCAATATGGTGCATTACTTAATTTCACCGTAGAGAGCGGATCTGTGCCCTGGCCACCCCTCCAGGCGGCCAATGGTACAGCCAGTAATGGATGCTGCTTTCTGGAGagtgCCAGTATGAGCGAGCTGAAGGACTGCCCCCCCCTGCAGTACTATGACTTCAAGCCGGTGGAGCATGGCAAGGTGTGCCCACGGTACACGGCGGTGCTGGGCCGCGCCGAGGACGACGGCATCGGCATCGAGGAGTGCCCGCCCTGGGGAAGCACTACTCGCAGCGCTGGGCTCAGGAGGACCTGCTGGAGGAGCAGAGAGACGGCGCACGCTCCAACGACAAGAAGAAGGGCATCATGGGCCCTCTGTCCGAGTTGGATGCcaaggGAGAATATTATCTCCCCGATGGAGGACTCTCCGATCCCAGAGGTCCCTGGGAAGGATGGAGGGACCGACGGAGCCAGCACCTCCCCCCGCAGCCAGGGCAAGGCCTTCAGcgTGCCGCACACTCGCTCTCTGGAGTCGCGGATCAAGGAGGAGCTGGTGTCTCAGGGGCTGCTGGAGGCGGAGGAGCGTGGGGGGCCAGGGGGGCCGGGCGGCGACTACAACGAGGTGATGGAGGCGTTCCGGCGCATCATGGCGGCACGGCAGAAGAAGCGCACGCCCACcaagaaggagaaggagcagGCGTGGAGAGCACTGAGAGAGCGGGAGAGCATCCTCAAACTCCTGGACGgcgGTGACATCATTCCCCGGAACGTGGCCGGTGGAATGCAGAACTCTCAGCCTGCACGATCACACTCAGAAGGGTTTttcaggggggagggggatttTGTTCAATTGTTCTACAAGGCGCTGGTGTTGGTACCCAAAACGCAGGCAGCCGTGAGAAGAGAGCGTTTGGTACACGATTCCACAATCACAAAAGCGCCGCGCTCTAGGGTGTTTCAAAACCCGCAGGCTCCGGACTCGGGGGCGGGAGCTGTGCCGGGACAGGACAACTCGATGACACGGAGACGCAGGCTGGGGCTCAGTTCGGAGTGGAGTCGGAGAGGCTCGGAGTCAGTGTCGACCCGGCGGCTCTCAGCCCAACTACCCGTCAGCGTGGTCCGCTCTGTGGCTGTGGGCTCCAGAGCGGCAATGTGTGGGCGGACGGCCTGCACTCTGGCCCCAGACGAGCTGAGCCGGGCCTCATGGTACCGGGACCGGTCAGGTCGGCGCCGTAGGCCCCAGTGGAGGGAGGGGGACGCGGAGAAGTACCGGCCCTCCTACAACCGGAGCCCTCAGTCCCTCGGCCCCGTGCTGCTCTCACACCGGCACTTCAATAAGgaCGCCCCAGTGGATGAGTGTGTGCTGGCGCTGATGCGCTGGGGTCTGGTTCCTGCCTGGTTCCGCGACAGCGACCCGAAGGCACTGCAGTTCAGCACCAGCAACTGCCGCAGCGAGAGCATCCTGCAGAAGAAATCGTACAAGGAGCCGCTGCTGCAGGGCAGGCGCTGCGTCGTCCTGGTGGACGGATTCTACGAGTGGCGTCGGCAGGAGAAGGACAAGCAGCCCTTCTTCATCTACTTCCCCCAGAGCCCCCCAGGGCTGGACCCTGCAGCCCCCAAGCCTCCGAGCTGCCCACACCTCCTGGACCAGggtGAGGAGGGCGAGGGCAGCGAGTGGACAGGCTGGAAGCTGCTAACGGTGGCTGGGCTGTTTGACCGCTGGTCGCCCCCCGGAGGTGGGGAGGACCTCTACAGCTACACTGTCCTCACCGTGGAGGCCTCCCCCAGCCTGCAGGGCATTCACGACCGGATGCCGGCAGTGCTGGACGGGGAGGACGCAGTGCAGCGCTGGCTGGACTTCGGGGAGGTTCGGCCGCTGGACGCCCTTACGCTGCTGCGCCCCACGGATTGCCTGACCTTTCACCCTGTCTCTGCGCTTGTCAACAACTCCCGCAACAACTCACCAACTTGTCTGCAGCCGAGCcagACCCCCCCTCCTTCAGCCAGCAGTAAGATGATGAGGAACTGGTTGAGCGCCGCCCCCCTGCAGAAGAGGAAGGCGCCGGAGACCCCAGAGGAGCAGGGGGGGGTGGAAGTGTTAGGCCGGGGTGGGGCCAGGAGTGGGATATTAAAATGGGTCACCAGGACCGACCCAAATAAGAAACCCAGGACTGGGTGacaaagagggagggagggaggaaaagagggggaggggcaCTGTTCCAGAAGCCAATAAAGTTGATTGACAG

Function

GO:

id name namespace
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017353 True 2277 mRNA 0.63 14 54343401 54352579

Neighbor

gene id symbol gene type direction distance location
AMCG00017352 LOC100305111 coding downstream 19948 54317093 ~ 54323453 (-)
AMCG00017346 LOC106583208,LOC106565550 coding downstream 67062 54264090 ~ 54276339 (-)
AMCG00017342 ruvbl1,LOC107721190,LOC107667375,LOC107568195 coding downstream 191553 54147224 ~ 54151848 (-)
AMCG00017344 NA coding downstream 227117 54107703 ~ 54116284 (-)
AMCG00017345 NA coding downstream 246278 54095864 ~ 54097123 (-)
AMCG00017360 prkar2aa,LOC103384990,LOC107669629,LOC107717523,LOC107556498,LOC105906428 coding upstream 202778 54555357 ~ 54558595 (-)
AMCG00017362 prkar2aa,LOC108265715,LOC107679546,LOC107591783,LOC107711958,LOC105906428 coding upstream 217692 54570271 ~ 54570558 (-)
AMCG00017359 slc25a20 coding upstream 219846 54572425 ~ 54578093 (-)
AMCG00017365 arih2,LOC102785176 coding upstream 227491 54580070 ~ 54587525 (-)
AMCG00017368 NA coding upstream 236480 54589059 ~ 54595357 (-)
G19992 NA non-coding downstream 285474 54056885 ~ 54057927 (-)
G19957 NA non-coding downstream 288302 54054836 ~ 54055099 (-)
G19923 NA non-coding downstream 302368 53904295 ~ 54041033 (-)
G19918 NA non-coding downstream 428525 53894336 ~ 53914876 (-)
G20066 NA non-coding upstream 17173 54369752 ~ 54370666 (-)
G20078 NA non-coding upstream 100042 54452621 ~ 54454276 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding upstream 142356 54494935 ~ 54498038 (-)
G20118 NA non-coding upstream 157657 54510236 ~ 54510488 (-)
G20122 NA non-coding upstream 226686 54579265 ~ 54579718 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other downstream 189307 54117264 ~ 54154094 (-)
AMCG00017343 NA other downstream 198185 54127687 ~ 54145216 (-)
G19950 NA other downstream 309240 54032639 ~ 54034161 (-)
AMCG00017334 NA other downstream 385928 53953294 ~ 53957473 (-)
G19824 NA other downstream 579025 53762998 ~ 53764376 (-)
G20064 NA other upstream 14205 54366784 ~ 54368016 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other upstream 175205 54527784 ~ 54535543 (-)
AMCG00017366 LOC105899076 other upstream 285844 54638423 ~ 54651864 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other upstream 347991 54700570 ~ 54723791 (-)
G20237 NA other upstream 484518 54837097 ~ 54838491 (-)

Expression


Co-expression Network