AMCG00017354


Basic Information

Item Value
gene id AMCG00017354
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54335940 ~ 54343047 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017354
ATGGAGTGGGCACCAGGGCAGCCAGCCAGGCTCGGCAAATCTCCGGGCAGGACTAGCGAGGAGCAGCTCGGCGGCGCCCCCTGCCGGACAGACGGGCTGGTGTCCAGGTGGGGGTCAGCGGGAAGGCCGCCCTCTTCTCAGCCGAGTGATACCGGGCGTCCCAGACGAACCCCTAATAATTCCCGGCCATTCTCGGGTAAAGTGGGTGCCCCTATCCGGTGCATTGCAATTAGCCCTGGGTACACCCGATACTTTGCGCCATATCTCCGGCGTCTGGGCACGCACGGCGCCCCGGAGCCTCTCCCCGGACCGGGCGGCGCCTGGGCTGTGCGCTGGCGGGGTCGGGGCGGCCGGGGTGACCGGGAGCCGCGGGAAACGGCGTCTGAACGCCCCgcaaaaaacacaactttccACACGCCGTGGCAGCGGCTGTTGTTGTTCTCAATCAGGTCCGCCTCTCGCTCATATAGCCGCCTCTCCAGCCGGCGCGCTGAGTCTCTGCACAAACACAGTCACTCCCTCCGGCAGCGCAGACCCGCAGCCCGACCCGCACTCACTCACAGCCCGCACTCACGCACCATGGCCAGCGAGGCGCAGGAGACTGCCCCGGTGTCGGTGTCCGAGGAGGCTCCGGCCGCCCCCGACAAGAAAGCCACCGCTGCCAGCAAGAAAGCCAAGCCGGCCAGCAGCGGGGCTGGGGCGGCGGCGGGGACTCCggccaagaagaagaagaacaagaagaagaagaaccaGCCGGGGAAGTACAGCCAGCTGGTGGTGGAGACCATCCGCAAACTGGCCGAGAGGAACGGCTCGTCGCTGGCCAAGATCTACAACGTGGCCAAGAAGGTGAGCTGGTTCGACCAGCAGAACGGGCGCTGCTACCTGCGCTACTCCATCCGGGCGCTGGTGCAGAACGACTCGCTGATCCAGGTCAAGGGCACCGGCGCCAACGGCTCCTTCAAGCTCAACAAGAAGAAGTTCGAGAAGCCGGAGAAGAAGAGCAGCGCGGCGGCGGCGTCCTCCTCCCGGGCGGGCAAGGGCAGCGGGGCGGCGCCGGCGGCCAAGAAAGCCAAGAAGCCCCTGCCGAAGAAAGGCAAGCCGAAGGCGGTCAGCAGCCCCAAGAAAAAGCCCACCAAGCCGGCGGCAAAGAAGGCGGCGGCAGCAGCCAAGCCCAAGCGGGTGGCCAAGAAGCCCATCGCCTCCCCGGCCAGCAAGAAGGTGAAGAAGCCCAAGAAGGCGAGCAAGCCCAGCGTGCCCAAAGTGCCCAAGAGCAAGCCGGCTGTGCGCCCCTCCCCGCGCGGCGGTCCTCTGCGTAGCCTAGCAACCACAGCCCGGGGTTTGCGCAATGTCCGTGCCGTGGGGCATTCTGGGAAACTGAGTCGTCCCCCCCGTCCTGCCTGGGGCCGGTGCACCCGGCCCACGGGGAACTGCAGGCCGGCCAGGGACAAGCGCGCCTTGGCCTTAGCCCTGGCCTTCCCCCCGGACAGGGCGCTCCGCAGAGTCGAGTGCAGTGTCCGCCGGCTCTACAGCACAGCCCATCAGCTGACCGGACCCCGTGTTTGGGGGTCTGTCCTGGCCCGGGCCCCGCAGCCGCAGTGGCCCTGCGGTTATACCAGCCCGTGCGCAGGCAGGGACAGCTGA

Function

GO: NA

KEGG:

id description
K11275 H1_5; histone H1/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017354 True 1644 mRNA 0.68 5 54335940 54343047

Neighbor

gene id symbol gene type direction distance location
AMCG00017349 rab7a,rab7,LOC108254780,LOC106518505,LOC105017315,LOC107093905 coding upstream 929 54325336 ~ 54335011 (+)
AMCG00017347 NA coding upstream 127219 54205132 ~ 54208721 (+)
AMCG00017340 NA coding upstream 165430 54153607 ~ 54170510 (+)
AMCG00017336 NA coding upstream 279275 54036514 ~ 54056665 (+)
AMCG00017335 LOC108435819,LOC108440644,LOC107712078,LOC107721176 coding upstream 302903 54013561 ~ 54033037 (+)
AMCG00017350 ARPC4,arpc4,LOC103385929,LOC107094019,LOC107753787 coding downstream 9659 54352706 ~ 54357989 (+)
AMCG00017351 NA coding downstream 16962 54360009 ~ 54366128 (+)
AMCG00017348 NA coding downstream 23689 54366736 ~ 54372123 (+)
AMCG00017356 NA coding downstream 46285 54389332 ~ 54422632 (+)
AMCG00017355 NA coding downstream 118862 54461909 ~ 54469135 (+)
G20006 NA non-coding upstream 164517 54171215 ~ 54171423 (+)
G19958 NA non-coding upstream 278020 54056860 ~ 54057920 (+)
G19899 NA non-coding upstream 294907 53948758 ~ 54041033 (+)
G19887 NA non-coding upstream 374102 53959463 ~ 53961838 (+)
G19889 NA non-coding upstream 421063 53912818 ~ 53914877 (+)
G20028 NA non-coding downstream 355 54343402 ~ 54345777 (+)
G20086 NA non-coding downstream 209093 54552140 ~ 54555325 (+)
G20136 NA non-coding downstream 272194 54615241 ~ 54615448 (+)
G20177 NA non-coding downstream 389973 54733020 ~ 54737869 (+)
G20218 NA non-coding downstream 452449 54795496 ~ 54797145 (+)
G19961 NA other upstream 269753 54064358 ~ 54066187 (+)
G19956 NA other upstream 280765 54054800 ~ 54055175 (+)
G19896 NA other upstream 388322 53939537 ~ 53947618 (+)
AMCG00017331 NA other upstream 399458 53915125 ~ 53936482 (+)
G19860 NA other upstream 471222 53864108 ~ 53864718 (+)
AMCG00017357 NA other downstream 80506 54423553 ~ 54452054 (+)
G20099 NA other downstream 184705 54527752 ~ 54529204 (+)
G20085 NA other downstream 230427 54573474 ~ 54582399 (+)
G20156 NA other downstream 320264 54663311 ~ 54664526 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other downstream 465419 54808466 ~ 54809106 (+)

Expression


Co-expression Network