AMCG00017355


Basic Information

Item Value
gene id AMCG00017355
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54461909 ~ 54469135 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017355
GTTAAGGTCAGTTCTCAGACCCCTTCCTTCCCTTACCGACTTCTTACGTCACGACCGATAATTGATAGCAGGTGAGGGACCAAAACACGCCGATCAGCGAGAGAGAGACGCGGAGGCTTATCGATAGTCAATCAATCGGCCATCAGAAGAGACGCTTCTGTGCAGTGTGTCTGGCGGTTCAGCTGACCATGGAGTACGCCATGAAGTCCCTTAGCCGCTTCACCCCCACTACGCTCTCCAAGTGTGTCTCAGCCAGCGCCTCCATGACCCAGCAGCTGCTGACTGGCCCCCCCCCCCGACCCAAGCCCTTCCGGGTCGCCAGCGCTGACCGCAGCGTGAAGAAAGGCATCATGGCAGACGGACTGAGGGACCTGCTGGACAAGGTGAGCGAGGCCCTGCACAAGGACGGCACGTCCACACTGGTGCTGGACGAGGATGGCACGGTGGTGGACACGGAGGACTTCTTCCAGACACTGGAGGACAACACTGACGTGGCGCggctgacctttgacctgtaCAAGTCGAGCCCGCAGGAGTTCATCGGCTGTCTGAACGTCAAGGCGACACTGTACGGCATGTACTCCATCTCCTACGACCTGCGCTGTTACGGAGCCAAGAAGATGCTGAAgGAGGCGCTGAGGTGGACCCTGTTCACCATGCAGGCCACGGGTCACATCCTGCTGGGCACTTCCTGCTACGTGCAGCAGCTATTGGAAGAGGAGGCGAAGGTGGTGGGCCAAAAGGCGGCCGTGGCCCCGCCCACACAAGTACCAACCATCCAATGGGGGAAGGCGGGTGTGTGACTTCAGGTGAAAGGGACAGGCGACGCAAGGCAAGGGATTGGACTGCAGAGGCTGGGGGGGCACCCTCGATGGATTCTGTTAACATGGCCAACTTTGGAGGCATGATGTCACACTGGACACTGTTCTGGATTCACGCAAACGCTCACGCACACACCTAACGCAATCTGCCGAGACCGaacctgtgtgtttttgttaattacTGTTGATTATGTTCAGAGGTGTGTTTTGAGGGGTACAGGGGTTGGGTTGGGGTTTGTTCTACTTGTTTAGCGCTGCAAAGAACTGTCCTGTCAGCCGCGTTCGTTGGCCTGTGTTCAGTCTTCCGACGTTCGTATTGATTTCTGTTACTTCTCATCGGGGTGTTATGCTGCTTGTATCTGTCGGCCTGTTGCTGCCCTCTGTGGGGGGTGTGAGGGAGCGTGGACGAGTCTGGGATCACAGTCCATTCCCCACGTGCTGCGTTGTCTCTAACCGCCACGCTGAACTCGTCTCTCCACATGGCTTCTACACGCCTGGTTTGACGTGTTGCCACATgagtttatttacagtgtcGGGCTGCGCCGCGCGCTCCACCCCGCGCTCTGAGAGACGTGTCTCCGGCTACGGCCTCGCAGCTCTGCTCTGGTTGTGCTGGGGGGTCACTGGGGTAAGGGGGTAGAGGACAGTTTGCAGTTCTGAAGAGAGAGGGGGTGTGAGAGTGGGGTGGCAACTTAGtgtgtctgttattattatttatttaatctctgtTCAAACAAGCACAAAACTGAACGCACACAAGCCAAACAACCCCAATCCCACCCCACTTTACAGGGGAGTTATCTGGGATTatggggggagaggaggaggaggagcggtgtgtgtggagggtggggggggaaatcTAATTACCCCATCCTTACCCTTCCCCCCACTCTGAGTCTGTGCCCTCTGACCCTGTTACAGCTCTATATCAGGTCTCACAGCCGTGCCGATGTACTTTGCCATGTTTTATCGTATTTaaagatgtatatttatatattttttttgttacctGACCTTGTCTTGTTGAccagtgttgttgtgtgtgtgcctgctcTATGCTCTTAGCCGTGTGGGGATGAATGGTATTTTATGGTACAGTAGCAAACTAACCAAAAcgataaatgaatgaattgatgCCACAAGAACGTTAATGATGTGACCAGAGTGAGTCGACTGCTTGTGTGTTGAGGGAGATTTAACCCCAGACGAATGTGCGGGCGggcccctctctccctctccagcgACTGCACTCACGAGACGTTACGGAAGGGTGGAGCGCACGAACTCGAGCTGTGCTTCCtacctgtttttaaaataaagtaaaataaaaaaaaaatattaaaagcactCCTTGACTGATGATAGTTTGGCTGTTGTTGCGCAGCCTGTAGGTCTGCTCGAATCAAACGCTTGTGCGCTGCAGGCTGCTCTTCCTCTGAGTGCCCGTAGGGCTGTGGCGGCACCCAGACTGTCACTCGGACGGGTACAACGTGGCCCTTGAGAGAGACGGGCACTGACATTGAGGGTGTCAGTGACTTCAGTACGTTACTGTGTTCAACAAGCTCTTGATGCCGTCTTGTTGACATTGGTCTTAATGAACGTTTTGTTGCGTTTGGCCTGTTTTGACCCTGGAGAGGCCGCAGTAACCCCCACAGTGGGCGGAATAGTTTTTTCGTGAGTAGGTCTTGATCTTACTGTTGCATTATCTATCTGTATTATGTAGGACTGTAAACCCGAAGTCAAATGATGTACTACTGTCGTGTAAAACTTTGTATcgcaataaaaatacacaaactcaACCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017355 True 2628 mRNA 0.53 6 54461909 54469135

Neighbor

gene id symbol gene type direction distance location
AMCG00017356 NA coding upstream 39277 54389332 ~ 54422632 (+)
AMCG00017348 NA coding upstream 89786 54366736 ~ 54372123 (+)
AMCG00017351 NA coding upstream 95781 54360009 ~ 54366128 (+)
AMCG00017350 ARPC4,arpc4,LOC103385929,LOC107094019,LOC107753787 coding upstream 103920 54352706 ~ 54357989 (+)
AMCG00017354 NA coding upstream 118862 54335940 ~ 54343047 (+)
AMCG00017361 LOC105927081,LOC106929785,LOC108235569,LOC106517999,LOC103143233,LOC103465231,LOC106950531,LOC107094004 coding downstream 24442 54493577 ~ 54495259 (+)
AMCG00017363 NA coding downstream 161503 54630638 ~ 54632572 (+)
AMCG00017364 NA coding downstream 197745 54666880 ~ 54673342 (+)
AMCG00017383 NA coding downstream 219788 54688923 ~ 54690827 (+)
AMCG00017370 NA coding downstream 352001 54821136 ~ 54826385 (+)
G20028 NA non-coding upstream 116132 54343402 ~ 54345777 (+)
G20006 NA non-coding upstream 290486 54171215 ~ 54171423 (+)
G19958 NA non-coding upstream 403989 54056860 ~ 54057920 (+)
G19899 NA non-coding upstream 420876 53948758 ~ 54041033 (+)
G20086 NA non-coding downstream 83005 54552140 ~ 54555325 (+)
G20136 NA non-coding downstream 146106 54615241 ~ 54615448 (+)
G20177 NA non-coding downstream 263885 54733020 ~ 54737869 (+)
G20218 NA non-coding downstream 326361 54795496 ~ 54797145 (+)
AMCG00017357 NA other upstream 9855 54423553 ~ 54452054 (+)
G20013 NA other upstream 69318 54307795 ~ 54392591 (+)
G19961 NA other upstream 395722 54064358 ~ 54066187 (+)
G19956 NA other upstream 406734 54054800 ~ 54055175 (+)
G19896 NA other upstream 514291 53939537 ~ 53947618 (+)
G20099 NA other downstream 58617 54527752 ~ 54529204 (+)
G20085 NA other downstream 104339 54573474 ~ 54582399 (+)
G20156 NA other downstream 194176 54663311 ~ 54664526 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other downstream 339331 54808466 ~ 54809106 (+)
AMCG00017369 ssr4,LOC107671948,LOC107737640,LOC108425558,LOC107560913 other downstream 373805 54842940 ~ 54846281 (+)

Expression


Co-expression Network