AMCG00017356


Basic Information

Item Value
gene id AMCG00017356
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54389332 ~ 54422632 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017356
acgTGCAGGAGTGTGGCAGCAGCAGACGTGGTGTTTCTGGTGGATGGCTCATCCAGCATCGGCCGTTTCAACTTCCAGGAGGTGAGGCGCTTCATGGAGGGGGTGGCCACGCCCCTGGCCAGTTCCGTGGGCAGAGGGGCCGTACGGTTTGGGACCGTGCAGTACAGCGACACATCCAGAGAGGAGTTTAATTTTGATAAGTACGAGAACGGAACGGAGCTGCTGAGCGCCATCCGCAACCTCAACTACAAGGGCGGAAACACGAGGACCGGAGCCGGACTCAAGTACGTCGCGGACAACTTCTTCAGCAGGGGGGGCCTCAGAGACGTGCCCAAGGTCACAATCCTCATCACAGATGGGAAGTCCCAGGACAGTGTGGATCAGCCCTCCCAGAAACTGCGCAGCCTGGGTGTCAAGGTGTTTGCCGTGGGGGTGAAGAACGCGGACCGCAGGGAGCTGGGCCAGGTGGCCTCCGAGCCGAGGGAAGACTTCACCTTCTATGTGGGCGACTTCAAGATCCTGAGTTCTCTGCTGCCCCTGGTGGCCCCGCGTGTCTGCACCAGCGCTGGGGGCACCTACATCGGCGATGGGAGCACAGAGCTGTTCTCTGGACCGTCCAATCTGCAGTTCTCCCGGGAGACCTTCGACTCTCTGCAGTTCCGCTGGCTCCCTGCAGGAGGGCCTGTGATTGGCTACAAGATACAGTACACACCGCTCTCTGGGCTGGGGCAGCCAATCACATCGGAGCTTGAGGAGGTGGgtgaCTGTGAGAGCGTTGGAGACGAGCTATGTTGCTCGGGGACTGAAATCAGCGACGGAATACCTGagTCCCTCCCGGGGGTGTCAAACCTGCGTGTGGCCCGAGTGGGGTATTTCACCCTCTCCCTGTCCTGGGATCCCCCCTCGTCCCGACCCCAGGGCTACCGGCTGACCTACGGCCCACGAGGTGAGGAGGCGAGAGAGAGCAGACAGAGCAACCAGCGCAGtcaactgtctgtctgtctctcactctctccacaTGTCTGTGTCTCAGGTCGCCCGGATCCCCAGCTGGACGAGAGGTCCCTCCCCGCTGACTCCACCTCTGTGGATCTGGAAGGCCTGGAGCCGGACACAGACTACACCCTGACCCTGCATCCCCTGTACCCCCGCAGCACCGCTGCACTGGCCACTGCCACTGCCCGCACCCtgcgTCTGGAGGGGGTGCAGCAGCTGTCTGTCCAGACCGCATCGGCGCGCAGTGTGCTTGTGCAGTGGAGGGGAGTGGGAGGAGCCACGGGTTACCGCCTGGTCTGGGGGCCATTCACAGGCCGCGAGGTGGACAGGCAGGACGTTGCCGCAGGAACGGAGTCCTACACACTGACCAACCTGCAGCCGGACACGGAGTACATCGTCACCGTGATCACGCTGTACGATGACACAGAGGGTCCCGCCACCACGGCCCGCTTCAAGATCGGTGCGGCACTGCACTActcactacacactacacactcacacacagctaCCAGTACAGCCAGTGCTTCTGTACAGGACTGTGGCTTCGATATGCACCTGTCAGCGTCCATGTGCACTGAGTCCAGTTCTGTCCGGTTTTGTCCCCCTTCCCTCCCAGAGCGATCGGAGCAGCAGACTCTCCGGACCTTCACCATCGGGCCGAGCACCATCCGGGTCACCTGGAACCTGATCCGCTCAGCACAGGGGTACCGGCTGGAGTGGAGACGGGCCGCGGGGGGTGAAACACAGAGGCAGTCTTTCTCCACCTCTACTAACAGCTATGAGATCAGGGGCCTGCAGCCAGGCACGGAGTACGTCATCACACTATACACGCTGTACGAGGGCCGAGAAGTGGCCACTCCCGCTACCACCTCCCCAACAGCCGGCACTGAGGAGACCTTCACTGTCCCTGGCGACCAGACGACCTTTGACCTGGAAAACCTGAAGGAGGGCGTGTCCTATGCGCTGAGTTTAACGGCGCTCGTGGGCAGCAGGGTGGGAAACCCCGTCTCTGTCACCATCAGGGCAGGTGAGCGCTGCGGACATGAGGAAATTGTGGTGCCCGTCTCCACGGTGTTGGGCCTGCGAGTGCTGGAGACAGGAAGTGACCGCGTCAGGATTGGCTGGACTGGCAACCCCCATGCAACCGGGTACAAGGTCACCTGGAGGGGCAGTGACGaTCGGGTGTTCAGTCAGATTCTTGCCAGGAATGCCAGTTCCTACCTGATCGTGGGGCTGCGGGAGGGAGAGGGGTACAGAGTGGGCTTGTCTTCACTGGTGGGCGGAGCCGAGAGCTCCCCTGACATCCTCAGTGTCAGGACTGAGCACTCAGTGGGCGGAGTCACGGACCTGCGGCTGATTGACGTCTCCAGCAGTCGAATCAGGATCGCCTGGACTCGGGCTCCCAGGGCAACAGGATACAAGGTTACCTGGCAACAAGGCAGAGgtgtaGAGCAGTCTCGTTTGCTGACAGGAAGCTCCTCCTCCTACACTATCGAGGGCCTATCACCGGACCAGGCTGTGGTGGTGGGCGTGTCTGCACTGATTGACGGGCGGGAGGGTGAGCCCATGAGGCTGCCCGCCCGCACGACCTCTGACACCGCGCCGGGGGAGGTGACGGGGCTGCGCGTGCTGGATACCAACGGCAGAAGGGTCCGCATCAGCTGGTCCCCCGTCACCAGAGCGACCGGATACAAGATCGTCTGGCGTCGTGGAGATGGGGTGGAGTCCTCTCGGTCAGTAGCTGGTGATGTCACTTCCTTTACCATTGACGGGCTGCAGGAAGACTCCGCCTACAGGATCTCGGTCTCTGCCCTGATTGGCTCCACAGAAGGAACCTCCACCTCCTTGAATACCCGGACAGaCCCAGTGAGGACAGTCACTAACCTGCGTGCTGTGGAGACCACCCCCGATCGCATCCGCATCTCCTGGACCGCCGTTGCCAGGGCCACGGGATACAGGGTCACCTGGAGGAGAAGTGATGgggcgGAGGTGTCTCGCGTGGTCACCTCTGATCTCACCTCCTTCGACGTGGAGGGGCTGCAGCAGGACACTCTGTACAGCATCCGCGTTGCCCCCATGACTGGGAACCGAGAGGGTGCCCCGGCAACCATCTCCGTACGCACagacAGGGAAGTGGAAGAGGTGGGTACTGTGACACGGCTGCGGGTGCAGGAGTCCCCCGGGAACACGGCGCGTGGTGTGGAGTCCAGacgggaggtggggggggatgtGACAGCAGTGGACATCGACGGTCTGGAGGAGGGCGTGCGCTACGTGGTCAGAGTGACGGCGCTGGTCAGGAACAAGGAGGGGCCACCAGTGTCCATCAGCGTCACCACGCCTCCCCTGCAGCCGGTGACCGGGCTGCGTGTGTCAGAGGTGACCCAGACCTCGGCGCTGCTGGACTGGGCAGTGCTGCCGGGGGCCAGCGGGTATGTGCTGAGCTGGAGAGACACGCAAGGTctggaggagctgcagagaCAGTCGGTGCCGGCCTCAGTGGGCTCGTACCGGGTCACCGGACTGCATCTGGGCCGCCAGTATGCCTTCACTGTGCAGCCTGTGTTCGGGTCAGAGGTCGGGCTGGAGGCCGCGGTCCAGGAGAGGACAgtgtgTACGGAGGGTGATGTTGACTTAGTGTTTGTGGTCCCGGGTTCGAGGGAGTCATCTCAGTCTGCGGAGGCCATTCGCTCTCTGCTGTACAGCGTGGCGGCCATGTTCCCTCGTGTCGGGCCACGGAACACGCAGgagagtcactgtactgcagtgtggTCTCTGAGCTGCAGTGTCTCTGTGGGCCAGGTGGGGGTGCTGGTGTACAGCTCAAGGGCCAAGGTGTGGTTTCTGCTGAATCGCCACAGCAGCCGTGACAATGTGCTGCAGGAGATCCAGGCTGTGCCCTTCGACGAGACGCCAGGAAACAACATCGGTGAGGGCATCGCCGCTCCACACCACCCCCCTGTACCCCCAGATGCCCCCACGCACCACACCACAACCCCCTGCCAGGCTGTGACCTTCGCCCAGCAGTACCTCCTGACCCCCCAAGCTGGCCGCCGTCCCCGCACCCCCGCCGTGCTGGTCATACTGGCCAACGCCAAATCTACCGACGACCTCCTGGCGCCCGCGGCGGCCGCCGATGCGGAGGAGTTGCGTCGCTCGGTGACGGACAGCAGCTCCCGGAACGTCCTGGTCGCCCGTAGCGACGCGCAGCTGGCCCGTCTCCATGGCAGCCTGGCCGACCTGGTCTGCGCAGTCGCCAGCGGCAGCGGACAGGGGAAGAAGGGCAGAGACGGTATTGATGGACAGAATGGAGAGCCTGGTCGGGATGGGATCCCAGGCAGGGAGGGGCCCCGGGGACCCCAGGGGCTCCCAGGGCTGCCAGGGACCGTTGTGGATCCGGGGATCGGGGTGcgaggagagaagggggagcGGGTGAGTACAGGGGAGCGAGGATCCGGGGGCCACACTAATGGGAGTCAGGGGCTGCCCGGCGTCAGAGGAGACCCTggTGAGCCAGGGGTGGCAGGCCCAATAGGGTTGAAAGGCGAGAAGGGCGAGCGGGTTCTCAGGGGCCCCAAGGGCTGGCCGGTCGTCCCGGGACACCAGGACCCCCAGGACTCTCTATCAAGAGCAGCCCACACCTGGTTGTCACCCGTGGCCCCCAGACACACAGCCGCTGAGAGAGGGGCCGGCAGGGGACCCCCACGCCCGGGGAACTGCCTGGAATACTGTTGGACGATCCGTAGAAAACCCTTCGAAAAGTTTGGGGAAAATGCAGAGAAAACTCCTCAGAAATTCTCTCCCGCTCTCATCCCCGGCGACTTGCAGGATTCTACTGCCCTGAGCCAGCAGGGCTTCGAGCTCCGAGGACATCCTGCACAGCTGAGCTGCCCAATGGCCCCCCCGGACCCACAGGCAGCTCAGGACCCCGTGGCCCCTCTGGAGAGCCCGGAGCAAGAGGAGACAAGGGCCCCAGGGGACCTCCAGGAGAGAGTGGCTCAAAGGGCGAGAGAGGCCTACCTGGACCTGCAGGAGAGAAGGGGGAGTCGGGAAAGGCAGGCGCAGCCGGACCCCCAGGACTCGGAGGTTTGCCGGGGTCCACTGGCCCGCCGGGGGAGAAGggaAGCGAAGGAGCTCGAGGGGAGCCTGGGAGAACTgGGCTGGCAGGGCACTCCCGGACCCGCAGGGCCACGCGGAGACAAGGGGGACCGGGGCACGCAGggcccccccggcccccccgGAAGAGTGATTGACCTGGAGAAAGAGCTCAAAGGTGATCGGGGTGAAAAGGGTGATCCCGGTGACCCTGGGGAGCACGGGGCCAAAGGTCAGAAGGGAGAGAGTGGCCCCCCTGGAGTGTCCGGGGAACGAcACACCTCTGCAAGTCTCTCTTTAAGCGTCTCTCTAGCTGAGCTGTGTTTGTCTCTGCAGGGAGCCGAGGGGCTGAGAGGACTGCCCGGGCCCAGGGGCGACCGGGGGCCGGCGGGGCTGGACGGACGCAACGGGCTGGATGGTAAACCGGGCCCTCCTGGAGTCCCTGGCCTCAGGGGGCTCCCGGGGCTGAGAGGAGAGCAGGGCCTCAATGGTCCAGTCGGCCCCCCCGGACCTCAGGGCTTACCTGGCAAACAAGGGGAGGACGGCAAACCTGCAATTCCTGGGCGCAATGGCGAGGACGGCACGCCAGGGGAGGACGGCAGGAAGGTCAGTCCACTGGCGAGGGGTTGCTGCGCTGCCCGGATAACTGTCACCCCAATTCACAGCCCTGTGCTCCCTGTATTTACATAG

Function

GO: NA

KEGG:

id description
K16628 COL7A; collagen type VII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017356 True 5781 mRNA 0.64 50 54389332 54422632

Neighbor

gene id symbol gene type direction distance location
AMCG00017348 NA coding upstream 17209 54366736 ~ 54372123 (+)
AMCG00017351 NA coding upstream 23204 54360009 ~ 54366128 (+)
AMCG00017350 ARPC4,arpc4,LOC103385929,LOC107094019,LOC107753787 coding upstream 31343 54352706 ~ 54357989 (+)
AMCG00017354 NA coding upstream 46285 54335940 ~ 54343047 (+)
AMCG00017349 rab7a,rab7,LOC108254780,LOC106518505,LOC105017315,LOC107093905 coding upstream 54321 54325336 ~ 54335011 (+)
AMCG00017355 NA coding downstream 39277 54461909 ~ 54469135 (+)
AMCG00017361 LOC105927081,LOC106929785,LOC108235569,LOC106517999,LOC103143233,LOC103465231,LOC106950531,LOC107094004 coding downstream 70945 54493577 ~ 54495259 (+)
AMCG00017363 NA coding downstream 208006 54630638 ~ 54632572 (+)
AMCG00017364 NA coding downstream 244248 54666880 ~ 54673342 (+)
AMCG00017383 NA coding downstream 266291 54688923 ~ 54690827 (+)
G20028 NA non-coding upstream 43555 54343402 ~ 54345777 (+)
G20006 NA non-coding upstream 217909 54171215 ~ 54171423 (+)
G19958 NA non-coding upstream 331412 54056860 ~ 54057920 (+)
G19899 NA non-coding upstream 348299 53948758 ~ 54041033 (+)
G20086 NA non-coding downstream 129508 54552140 ~ 54555325 (+)
G20136 NA non-coding downstream 192609 54615241 ~ 54615448 (+)
G20177 NA non-coding downstream 310388 54733020 ~ 54737869 (+)
G20218 NA non-coding downstream 372864 54795496 ~ 54797145 (+)
G19961 NA other upstream 323145 54064358 ~ 54066187 (+)
G19956 NA other upstream 334157 54054800 ~ 54055175 (+)
G19896 NA other upstream 441714 53939537 ~ 53947618 (+)
AMCG00017331 NA other upstream 452850 53915125 ~ 53936482 (+)
G19860 NA other upstream 524614 53864108 ~ 53864718 (+)
AMCG00017357 NA other downstream 921 54423553 ~ 54452054 (+)
G20099 NA other downstream 105120 54527752 ~ 54529204 (+)
G20085 NA other downstream 150842 54573474 ~ 54582399 (+)
G20156 NA other downstream 240679 54663311 ~ 54664526 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other downstream 385834 54808466 ~ 54809106 (+)

Expression


Co-expression Network