AMCG00017359 (slc25a20)


Basic Information

Item Value
gene id AMCG00017359
gene name slc25a20
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54572425 ~ 54578093 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017359
CTGCGTCACTTCCCGAGCCAGAGCGGCTGCGGCGCTGCGTCACTTCCCGAGCCAGAGCGGCTGTCCACACGGGGCTTCCGGGCGCGGTCGTGCAGCGGAAGAGGCGGCCGGTGTCGCAGTGAAGCCGCTCCGGCGGCGATGTGGGTGAAAGGTCGGCGCAGCTGCCAGTGAGGGTGACACTCAGGGAGTCGTCCGCTCAGTCCTCCGCGCCTCTCGGACCGCCAGCACCGCGCCGCGCCGGTCATCTTCCACCGAGTCCGAGTCACCATGTcgaagcagcagcagcccatAAGCCCGGTGAAGAACTTCTTCGCCGGGGGTTTCGGGGGCGTCTGCCTGGTGTTCGCCGGTCACCCCCTGGACACCATCAAGGTGCGGTTGCAGACGCAGCCCAAGCCGGCTCCAGGGCAGGCCCTGCTGTACAGCGGCACCTTCGACTGCTTCAGGAAAACCTTTGTTaaagaggggGTGAAGGGTCTGTATAAGGGCATGGCAGCCCCGATTATTGGGGTGACCCCGATGTTCGCAGTGTGTTTCTTCGGGTTTGGTCTGGGCAAGAAGCTGCAGCAGAGGAGCCACGATGACGTGCTGACgtATCCTCAGCTGTTCGCTGCAGGTATGCTGTCGGGCGTGTTCACCACGGCCATCATGGCTCCAGGAGAGCGGATCAAGTGTCTCCTGCAGATCCAGGCTGCCTCTGGGGAGGTGAAGTACGCCGGGCCGATGGACTGTGTGAAGCAGCTGTACAGACAGAGCGGCCTGAAGGGAATCTACAAGGGCACGGTGCTCACACTGATGAGAgatgTTCCTGCCAGTGGGATGTACTTCATGACCTACGAGTGGCTGAAGAACATCTTGACCCCAGAGGGCAGGAGCCCCAGTGAGCTCAGCGTGCCCAGTGTGCTGTTTGCGGGGGGGATGGCAGGAATATTCAACTGGGCCGTGGCCATCCCACCCGACGTCCTCAAGTCCCGATACCAGACCGctccagAGGGTCGCTATCCTCATGGATTCCGTGACGTCCTGAGGGAGCTGCTGCGTGAGGAGGGTGTGGCCTCGCTGTACAAGGGCTTCACCGCCGTCATGCTACGTGCCTTCCCTGCCAACGCTGCATGTTTTCTGGGGTTTGAAATGGCCATGAAGTTCCTGAACTGGTTAGCGCCGGACATGTGAGGAGCTCTTCACTGTGGGACGGAGGAGCCAGCAACACACGGATGGACAGACGGGCTTGCAAgtgaacagagagagggagagactgatCTACAGAGAAACATCCACTGAacatggacagacagacaaactaACTTCCAAACGGATAGACGAGCAGAGGTCTACTGACAGAGTAGCAGACAGACACGCACTTACAGACAGACTGATGTACTGATGACAGAACAatctgcagagacagacagccGTGaatgaacagacagacaggcctttccagattaattgtttttaatctgatactttttttttgtaattttgtttagtttttgagGCTGAGGAGTGATCTCAGCCACTTTGCCTTACAAGACTAATGTGAAGCAATAGCTGCAAAGCAGGGAATACTACACCAGTCTGAATGTGtctttatatgtatgtatgtatgtatgcatgcatataGAGAACCGTTTATGCCTGTACAGATTTATACACATGAGCATTGCATTCAGCGCCTGTGGGAGTGTTTATTGCCCTCGCTGCTGCACTTTGACTCGATATAAACTCCTCTCTTCCTGGTGTGAGTGTCACAAGACTCGCCTCACTGCGCACTGACTTCCTGTGCCGCACTGACAGCCCCCGTCTCCTGTGCTCATTCCACAAACTATTTATCTACTCATTAATTCTGTGGttgattgtattaataattcaataaggAGAGGACTTTATCCACACTGACATATTAGTTATAGTTTTTTGTATAATCTAACAGTTTTATACCGATATGCTGCCCTACCCATAaaacgcacgcacgcacgcacgcacaatGGGACCGACAACGATGACGAAGTTCAATTAAAATCTCCACTCCAGCGCTGCGGTTTGACCTGCGCCAGGTATGTTTCTTGCGAGATCGGCCCTGCGGTGCGGCGAGCGGCCGCCAGGGGGAGCGCCAGACTTGCGCACTGATGCGAACCGAGAAGAGCCGGGATTGAAGCTGGGCGGTGCACCCGGCGAGGGCAGATTCAGGCGACCGTCCCAGTCCCGGCTCTTCACGGCCGGGTTGTTCAGCAGTGACTGCCTGACACACCTGACACCCCGCTGTGGGAGAAGGACTGTGACGTCACGGGGGAGAGTACACGTGCCAGAGATCGTGCATCACCTGGAGTTCCAGTAACCATCCATGGCATTTTAACCATTATCACCATTATCAGTGTGTTTTCaagttattcatttaaaagcacatcaaTCATTTGCGTTATttcccatttgtatttttgtcgTTTTGGTTAATGCCGAAGACGTTAGTGACTGCCCGGTCGGTGTGGGCGCTCAGGGAGGGTGCTGAGAAGAGAGGGAGCTACTGTCTGGGACAAAGACATAAACACTGCAGTGGAAAAACttttacaattgtattacatGTAATGGTGATTGTTTATCAAACCATTCTTATCGatcgattatatatatataactattttatGTAAGTGTTTTGAACGGCGATCGATCACAGTGAATAGCATTTCACATTGTCAGGACTCAATCATCGcgtattttaatactttattcCTACCAGGTAGGATCAAGTCGTGTCCAATAGACTGACAAAATACACAGAGACCTATAGTACAGTGAAGTGCAGGCGCAGTTCATTACACTGTATAACATTACCCTGCAGTTCAAAACAACCCAATAAATCCTCTGCGCAGTGCAGGGGCTGCAGTGTGTAATTGTGGGGTCATCGTGTCGCTTCTGTCCACTGCTATTGTATTGAACGCAGG

Function

symbol description
slc25a20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in visceral fat. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).

NR:

description
mitochondrial carnitine/acylcarnitine carrier protein

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0006810 transport biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017359 True 2942 mRNA 0.53 9 54572425 54578093

Neighbor

gene id symbol gene type direction distance location
AMCG00017362 prkar2aa,LOC108265715,LOC107679546,LOC107591783,LOC107711958,LOC105906428 coding downstream 1867 54570271 ~ 54570558 (-)
AMCG00017360 prkar2aa,LOC103384990,LOC107669629,LOC107717523,LOC107556498,LOC105906428 coding downstream 13830 54555357 ~ 54558595 (-)
AMCG00017353 NA coding downstream 219846 54343401 ~ 54352579 (-)
AMCG00017352 LOC100305111 coding downstream 248972 54317093 ~ 54323453 (-)
AMCG00017346 LOC106583208,LOC106565550 coding downstream 296086 54264090 ~ 54276339 (-)
AMCG00017365 arih2,LOC102785176 coding upstream 1977 54580070 ~ 54587525 (-)
AMCG00017368 NA coding upstream 10966 54589059 ~ 54595357 (-)
AMCG00017367 qars,LOC107675620,LOC107693419 coding upstream 76742 54654835 ~ 54661911 (-)
AMCG00017379 NA coding upstream 115791 54693884 ~ 54701627 (-)
AMCG00017380 NA coding upstream 125854 54703947 ~ 54704219 (-)
G20118 NA non-coding downstream 61937 54510236 ~ 54510488 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding downstream 74387 54494935 ~ 54498038 (-)
G20078 NA non-coding downstream 118149 54452621 ~ 54454276 (-)
G20066 NA non-coding downstream 201759 54369752 ~ 54370666 (-)
G19992 NA non-coding downstream 514498 54056885 ~ 54057927 (-)
G20122 NA non-coding upstream 1172 54579265 ~ 54579718 (-)
G20131 NA non-coding upstream 29270 54607363 ~ 54607614 (-)
G20137 NA non-coding upstream 37153 54615246 ~ 54615450 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other downstream 36882 54527784 ~ 54535543 (-)
G20064 NA other downstream 204409 54366784 ~ 54368016 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other downstream 418331 54117264 ~ 54154094 (-)
AMCG00017343 NA other downstream 427209 54127687 ~ 54145216 (-)
G19950 NA other downstream 538264 54032639 ~ 54034161 (-)
AMCG00017366 LOC105899076 other upstream 60330 54638423 ~ 54651864 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other upstream 122477 54700570 ~ 54723791 (-)
G20237 NA other upstream 259004 54837097 ~ 54838491 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00763236_00766749 SLC25A20.2, SLC25A20, SLC25A20.L, SLC25A20.2.S coding CI01000186 null 763082 ~ 766749 (-)