AMCG00017364


Basic Information

Item Value
gene id AMCG00017364
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54666880 ~ 54673342 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017364
ATGAGACTCGGAGGGCGGTGCTGTGAGGTGCTGTCTCCCCCTGCTGGCTGCATGCTGCGACTGCTGGGGCCAGTTGGTGTGAGAAGTGGGATGTCCCAGCATGCCGTGCTctggACAGAGACAAGCAAGGGTCATTGGACAGGGGTGATGGGGGGGCGGGTGTGGACATTGACCCAGACGGCGGACAGGCTGTGGTTCCACCGCTACAGTACCCAGCCAGGCCCGAGGGAGGGGTCGGAGGTCGTGACCCCTGAGcatgaggaggaagaggatggGAAGGACGAAGAAGCTCTGAGGGATTACTTCCAGTTGAAGGTGCAGCTGGGGGGGCTGTACCAAGGTGCCTGCCACATCCTGGATATGAAGGGCCCTGATTGGCTGGCCTCCCTGAGGGGCGTGGCCTACCCAGAAGCACGGTCTGCGCTGTGCGCACTGCCAGGGGTTGGACTCAAGGTGGCGGACTGCGTGTGCCTGATGTCGCTGGACAAACTGGGCGTGGTGCCAGTGGACACCCACGTGTGGCAGATCGCCCGCCGGCACTACCTCCCAGAGCTGGGCTCGGCGCAGCGCAGCCTCACACCCGCACTGAACCAGCGCATCGAGAAGACGATCGCCATGTTCTCACTAGTGAAGATTGTAGTCTGGATCCTGGCGGTTTTAACAGTGAGCTCTCCGGTGCACCGTGGACCCTCGGGCTGCCCTGCCTGGAGGAGATGTGCCTTGTTGGGCCTCAGTGGGCCCTCGCCACCCGGCTGCCCCACCGCTCCTAAGCGCCTGCCTCGGCTCCGCTGTGGCTGTGTTATTGTTGCTCTGGCGGGCCGCTGCTGCTCTGCCACTCGCTCTGCCGCATCACACAGCCTCCCGGCGCTGGCCGGCACGGACACCGGACACGATAGACTGGAGGATCTGCCCTGGATCATCCGCCCCACCTGGGCTTCCCAGCACCGCCCTGCCCTCTCGAATCCCAACTCACTGCACTCTGCCCCCGCTGCGTCTCGTGGCCTCACCCCACTGTATCGCCCCCCGGTCCCCTGCTGCTTTACCACCCTGCCCTCTGTGCTGGAGGCTCCTACAGGCCGAGCCTCTGGCACCGCTGGGCTCTGTGTGGCTCGGGAGGAGAGGGGCCTCCATACATCCCCCCCCGGCTCATCGCATCTCTCAGCCTCTCCTCAAGCTGCTCACCCAGTGCCTGACCCCACCCTTGCTGCCTCACCCACACTGTCTCCCCACTCCTGA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process

KEGG:

id description
K03660 OGG1; N-glycosylase/DNA lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017364 True 1236 mRNA 0.65 7 54666880 54673342

Neighbor

gene id symbol gene type direction distance location
AMCG00017363 NA coding upstream 34308 54630638 ~ 54632572 (+)
AMCG00017361 LOC105927081,LOC106929785,LOC108235569,LOC106517999,LOC103143233,LOC103465231,LOC106950531,LOC107094004 coding upstream 171621 54493577 ~ 54495259 (+)
AMCG00017355 NA coding upstream 197745 54461909 ~ 54469135 (+)
AMCG00017356 NA coding upstream 244248 54389332 ~ 54422632 (+)
AMCG00017348 NA coding upstream 294757 54366736 ~ 54372123 (+)
AMCG00017383 NA coding downstream 15581 54688923 ~ 54690827 (+)
AMCG00017370 NA coding downstream 147794 54821136 ~ 54826385 (+)
AMCG00017382 NA coding downstream 163395 54836737 ~ 54837616 (+)
AMCG00017371 wdr82,swd2,LOC107712117,LOC106565976,LOC107584451,LOC107673495 coding downstream 183484 54856826 ~ 54863910 (+)
G20136 NA non-coding upstream 51432 54615241 ~ 54615448 (+)
G20086 NA non-coding upstream 111555 54552140 ~ 54555325 (+)
G20028 NA non-coding upstream 321103 54343402 ~ 54345777 (+)
G20006 NA non-coding upstream 495457 54171215 ~ 54171423 (+)
G19958 NA non-coding upstream 608960 54056860 ~ 54057920 (+)
G20177 NA non-coding downstream 59678 54733020 ~ 54737869 (+)
G20218 NA non-coding downstream 122154 54795496 ~ 54797145 (+)
G20156 NA other upstream 2354 54663311 ~ 54664526 (+)
G20085 NA other upstream 84481 54573474 ~ 54582399 (+)
G20099 NA other upstream 137676 54527752 ~ 54529204 (+)
AMCG00017357 NA other upstream 214826 54423553 ~ 54452054 (+)
G20013 NA other upstream 274289 54307795 ~ 54392591 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other downstream 135124 54808466 ~ 54809106 (+)
AMCG00017369 ssr4,LOC107671948,LOC107737640,LOC108425558,LOC107560913 other downstream 169598 54842940 ~ 54846281 (+)

Expression


Co-expression Network