AMCG00017368



Basic Information


Item Value
gene id AMCG00017368
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54589059 ~ 54595357 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00017368
ATGGAGGAAGAGTACGAGGTCATCGTGCTGGGGACAGGACTcaagGAGTGTGTTCTGTCGGGTATCATGTCAGTCAATGGGAGGAAGGTTCTGCACATCGACAGGAACCCTTACTACGGAGGAGAGAGTGCCTCCATCTCTCCCTTGGAGCAGTCTCTGGGTCGGGGGAGGGAGTGGAATGTTGACCTCATCCCCAAATTTCTCATGGCCAATGgccAGCTGGTGAAGATGCTGCTGTACACACAGGTGACGCGGTACCTGGACTTCAAGGTGGTGCAGGGCAGCTTCGTCAGCCGGGCCGGCCGGGTCCACAAGGTGCCGGCTACTGAGGCCGAGGCTCTGGGGTCAGACCTGATGGGTATGTTTGACAAGCGCCGTTTCCGCAAGCTGCTTCAGTTCGTCCAGCAGTTTGAGGAGGGCGACCTGCGTACCCACCAGGACCTGACCCCCCACGCCTCTGCGCGGGACCTCTTTCGCAAGTTCGACCTGGGGCCCGACGTCATTGAGTTCACTGGCCACGCCCTCGCGCTGCACCACAACGATGAGTCATTTGTGCGCTGTAAGCAGCTGATCTGTGACCCCAGCTATGTCCCCAACAAAGTGAGGAAGGTGGGCCGGGTCATCAGGGTCATCTGCATCCTCAACCATCCAATCAGAAACACGCAAGACGCCAGCTCCTGCCAGATCATCATCCCCCAGGCCCAGCTGCACAGGAAGTCAGATATCTATGTGTGTATGGTGTCCTATGCCCACAATGTGGCAGCAGAGGGGAAGTACATTGCCATGGTGAGCACCACCGTGGAGACCAGCACCCCCGAGAAGGAGGTGCAGCCGGGGCTGGATCTGCTGGAGCCCATCCTGCAGAAGTTTGTCTCCATTACCAACCTGCTCATCCCGAAAGACGACGGGAGGCAGAGTCAGGTCTTCATCTCTCGCTCCTATGACGCCGCCACGCACTTCGAGGCAGAGTGTGATGACATCAAGGACATGTACCTGCGCATGACGGGGTCGGGTAGCAGAACCGATCCGAACCGCAGACTCTGGACGCGGGCCGGAGTGCGTACGACCAGGCGGTCAGAAACGGCCCCCCAGCGGTGA

Function


GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00017368 True 1098 mRNA 0.59 10 54589059 54595357

Neighbor


gene id symbol gene type direction distance location
AMCG00017365 arih2,LOC102785176 coding downstream 1534 54580070 ~ 54587525 (-)
AMCG00017359 slc25a20 coding downstream 10966 54572425 ~ 54578093 (-)
AMCG00017362 prkar2aa,LOC108265715,LOC107679546,LOC107591783,LOC107711958,LOC105906428 coding downstream 18501 54570271 ~ 54570558 (-)
AMCG00017360 prkar2aa,LOC103384990,LOC107669629,LOC107717523,LOC107556498,LOC105906428 coding downstream 30464 54555357 ~ 54558595 (-)
AMCG00017353 NA coding downstream 236480 54343401 ~ 54352579 (-)
AMCG00017367 qars,LOC107675620,LOC107693419 coding upstream 59478 54654835 ~ 54661911 (-)
AMCG00017379 NA coding upstream 98527 54693884 ~ 54701627 (-)
AMCG00017380 NA coding upstream 108590 54703947 ~ 54704219 (-)
AMCG00017375 NA coding upstream 130248 54725605 ~ 54729120 (-)
AMCG00017374 mapk3 coding upstream 137717 54733074 ~ 54748372 (-)
G20122 NA non-coding downstream 9341 54579265 ~ 54579718 (-)
G20118 NA non-coding downstream 78571 54510236 ~ 54510488 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding downstream 91021 54494935 ~ 54498038 (-)
G20078 NA non-coding downstream 134783 54452621 ~ 54454276 (-)
G20066 NA non-coding downstream 218393 54369752 ~ 54370666 (-)
G20131 NA non-coding upstream 12006 54607363 ~ 54607614 (-)
G20137 NA non-coding upstream 19889 54615246 ~ 54615450 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other downstream 53516 54527784 ~ 54535543 (-)
G20064 NA other downstream 221043 54366784 ~ 54368016 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other downstream 434965 54117264 ~ 54154094 (-)
AMCG00017343 NA other downstream 443843 54127687 ~ 54145216 (-)
G19950 NA other downstream 554898 54032639 ~ 54034161 (-)
AMCG00017366 LOC105899076 other upstream 43066 54638423 ~ 54651864 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other upstream 105213 54700570 ~ 54723791 (-)
G20237 NA other upstream 241740 54837097 ~ 54838491 (-)

Expression



Co-expression Network