AMCG00017371 (wdr82,swd2,LOC107712117,LOC106565976,LOC107584451,LOC107673495)


Basic Information

Item Value
gene id AMCG00017371
gene name wdr82,swd2,LOC107712117,LOC106565976,LOC107584451,LOC107673495
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54856826 ~ 54863910 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017371
ATGGAGAACAACACAgctgagCCCCGGGCGCGGGTTTCCTCTCCCTCCGCCTCGGGGGCGCGCACGTCAGGAAGGCGGGGCGTGCACGCAGCTCGGGCCTCGGGACCGATCGACGCTGGAGAGACGGGCCGGTGCGAGCGGAGAGCAGGGCGCTATATAAACACAGGCGTCCCGGCTGCCAGCGGAGCGGGACCCGATCACCACCGTGAGCAGAGACGCGCGGAGCAGCGGCCGCCGCCGGGCTCGGGAGGGACAGCCATGAAGCTGACGGACAACGTGCTGCGGAGCTTTCGGGTCGCCAAGGTCTTCCGCGAAAACTCGGACAAAATCAACTGCTTCGACTTCAGCTCCAACGGGGAGACGGTGATCTCCAGCAGCGACGACGACTCCATCGTGCTGTACGACTGCCAGGAAGGAAAACCCAAACGCACCCTCTACAGCAAGAAGTATGGAGTGGACCTCATCCGGTACACACACGCAGCCAACACCGTGGTCTACAGCTCCAACAAGATCGATGACACGATCCGGTACCTGTCTCTCCACGACAACAAGTACATCCGCTACTTCCCCGGACACAATAAGAGGGTAGTGGCTCTGTCCATGTCTCCAGTGGATGACACCTTCATCTCGGGCTCTCTGGACAAGACCATCCGGCTGTGGGACTTGCGCTCACCCAACTGCCAGGGCCTCATGCACCTGCAGGGGAAGCCGGTCTGCTCCTTCGACCCCGAGGGTCTGATCTTTGCCGCGGGCGTCAACTCCGAGATGGTGAAGCTGTACGACCTGCGCTCCTTCGACAAGGGCCCCTTCGCCACCTTCAAGCTGCAGTACGACCGCAGCTGTGAGTGGACCGGCCTGAAGTTCAGCAATGACGGGAAGCTCATCCTGGTGTCGACCAACGGGGGCGCTCTGCGGCTGCTGGACGCCTTCAAGGGAGCTGTGCTGCACTCCTTCGTGCCCCGCGTAGCCGGCTCTGCCCTCAGCCTGCAggggtgtgtctctgtgctggtGCCAGGGGCCACAGCCTGCTGCAGAGTAGCTGGGttcatgggggtgggggggggaatttCAGATCTGACCTAA

Function

symbol description
wdr82 Predicted to enable chromatin binding activity. Predicted to be involved in histone H3-K4 trimethylation. Predicted to be located in nucleus. Predicted to be part of Set1C/COMPASS complex. Orthologous to human WDR82 (WD repeat domain 82).
swd2 Contributes to histone methyltransferase activity (H3-K4 specific). Involved in histone lysine methylation and nucleic acid metabolic process. Part of Set1C/COMPASS complex and mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human WDR82 (WD repeat domain 82).

NR:

description
PREDICTED: WD repeat-containing protein 82

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K14962 WDR82, SWD2, CPS35; COMPASS component SWD2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017371 True 1083 mRNA 0.63 8 54856826 54863910

Neighbor

gene id symbol gene type direction distance location
AMCG00017382 NA coding upstream 19210 54836737 ~ 54837616 (+)
AMCG00017370 NA coding upstream 30441 54821136 ~ 54826385 (+)
AMCG00017383 NA coding upstream 165999 54688923 ~ 54690827 (+)
AMCG00017364 NA coding upstream 183484 54666880 ~ 54673342 (+)
AMCG00017363 NA coding upstream 224254 54630638 ~ 54632572 (+)
G20218 NA non-coding upstream 59681 54795496 ~ 54797145 (+)
G20177 NA non-coding upstream 118957 54733020 ~ 54737869 (+)
G20136 NA non-coding upstream 241378 54615241 ~ 54615448 (+)
G20086 NA non-coding upstream 301501 54552140 ~ 54555325 (+)
G20028 NA non-coding upstream 511049 54343402 ~ 54345777 (+)
AMCG00017369 ssr4,LOC107671948,LOC107737640,LOC108425558,LOC107560913 other upstream 10545 54842940 ~ 54846281 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other upstream 47720 54808466 ~ 54809106 (+)
G20156 NA other upstream 192300 54663311 ~ 54664526 (+)
G20085 NA other upstream 274427 54573474 ~ 54582399 (+)
G20099 NA other upstream 327622 54527752 ~ 54529204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032255 wdr82 coding NC_007117.7 CM002890.2 41452979 ~ 41461390 (+)