AMCG00017377 (LOC107672588)


Basic Information

Item Value
gene id AMCG00017377
gene name LOC107672588
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54797011 ~ 54805363 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017377
ATGTCCACTTTGATGGAGCTGTGTGGGGGGTTACCCCTGAACCCCCTGCCCCCAAACAGAGGCCGGGACCCCTCCCTGCCCCATGCGCCCATCCGCACCCCCGACCTGTCGGAGCAGGAGGAGAAGTTGGCTTTGAGGAACGCTCTGCGCTACATCCCCCCCCACCTGCACGGTGCCCTGGTGGAGGAGTTCGCACAGGAgGCCTACCCCCTGGCGCAGTACCCGTGTCGCACTCCACATGCTGCCGCCATCATGCTCATGATCATGAACAACCTGGACCCAGCTGTTGCACAGtTTCCTCAGGAGCTCGTCACCTACGGGGGCAACGGACAGGTATTCAGCAACTGGGCCCAGttCTGGCTGGTGCTGCAGTACCTCAGTGAAATGACAGAGGAGCAGACCCTGGTGATGTATAGCGGACACCCCCTGGGCCTGTTCCCCAGTCCGCCCACCGCCCCCCGCCTCATGACGGCAGGAAGCTACTGTTATATCGGCCCCCAGGGGATCGTGCATGGCACTCTGctAACGGTGCTGAATGCGGGCCGCCGGTACCTGGGCTCGGGGGAGCTGGGGGGGCGGGTGCTCGTGACGGCCGGGCTGGGGGGCATGAGTGGGGCACAGGCCAAGGCCGCAGTCATAGCCGGCTGTGTGGGGGTCATCGCCGAGGTGAGGAGGCAGCGTCGctctgtgtatcaGGAGGCCCGCAGGAACAAGGAGGCCCTCAGCCTGGGTTATCATGGGAACGTGGTGGATCTGTGggagcGCCTGCTGCAGGAGTACGAGCGGTCGGGAGAGCGGCTCGTCGACCTGGGCTCAGACCAGACCTCCTGCCACAACCCGTACAGCGGGGGCTACTACCCGGCCCAGCTCAGCCTGCAGAGCGCCCAGGAGCTCATGCACAGTGACCCGGCCCGCTTCCGCAGCCTGCTGGCGGAGGCCGGGATGTTCTTCTGGGACTACGGGAACGCCTTCCTGCTGGAGGCCCAGAGAGCCGGGGCCGATGTGGAGAAGCACGGAGCTGGGAAGACAGAGTTCAGATACCCCTCCTACATCCAGCACATCATGGGGGATATCTTTTCTCTGGGCTTTGGACCATTCCGCTGGGTGTGCACGTCCGGTGACCCCCGCGACCTGGCGCTGActgatgacatcactgctgCCGTGCTGGAGGGCATCAGCACCACAGtgtcGGAGCGTGTGAGGCAGCAGTACAATGACAACATCCGCTGGATCCGCCAGGCAGCGAGACACAACATGGTTGTGGGCTCCCAGGCGCGGATCCTGTACTCTGACCAGAGGGGTCGGGTCGCCATCGCTGAGGCGTTCAACCAGGCCATCAGGCAGGGCAGGATCGGGGTAAACACACTGCGCAAACCGCAGAATAAGAGCACAGTGACGATGACGTTGCCCTTGCCTCAGGCCCCCGTGGTGATCAGTCGGGACCACCATGATGTCAGCGGCACAGACAGCCCCTTCAGAGAGACCTCCAACATCAGCGATGGCTCCGCCTTCTGCGCAGaCATGGCAGTACAGAACTTCGTGGGCGATGCATTCCGAGGGGCGACTTGGGTGGCTCTGCACAATGGAGGGGGAGTGGGCTGggGGGAGGTGATCAACGGTGGCTTCGGGCTGGTTCTGGACGGGTCGGAGGAGGCGGGCCGGCGGGCACGGACGATGCTGAACTGGGACGTGTCCAATGGGGTGGCGCGGCGCTGCTGGGCTGGCAACGGTCACGCCCTCGACACGGTCCGGCGCAGCATGGCGGAGGAGGCGGGTCTGCGGGTCACACTGCCTCACAGCGTGCAGGACGACAGCCTGCTGGACACAGCGCTGCGGGGCTGA

Function

NR:

description
PREDICTED: urocanate hydratase-like

GO: NA

KEGG:

id description
K01712 hutU, UROC1; urocanate hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017377 True 1842 mRNA 0.65 18 54797011 54805363

Neighbor

gene id symbol gene type direction distance location
AMCG00017378 NA coding downstream 2229 54791836 ~ 54794782 (-)
AMCG00017373 dnah1 coding downstream 7933 54750483 ~ 54789078 (-)
AMCG00017374 mapk3 coding downstream 48639 54733074 ~ 54748372 (-)
AMCG00017375 NA coding downstream 67891 54725605 ~ 54729120 (-)
AMCG00017380 NA coding downstream 92792 54703947 ~ 54704219 (-)
AMCG00017372 sec61a1,LOC107384934,LOC102228108,LOC106518493,LOC103023094 coding upstream 8530 54813893 ~ 54820175 (-)
AMCG00017376 NA coding upstream 41531 54846894 ~ 54853690 (-)
G20137 NA non-coding downstream 181561 54615246 ~ 54615450 (-)
G20131 NA non-coding downstream 189397 54607363 ~ 54607614 (-)
G20122 NA non-coding downstream 217293 54579265 ~ 54579718 (-)
G20118 NA non-coding downstream 286523 54510236 ~ 54510488 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding downstream 298973 54494935 ~ 54498038 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other downstream 73220 54700570 ~ 54723791 (-)
AMCG00017366 LOC105899076 other downstream 145147 54638423 ~ 54651864 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other downstream 261468 54527784 ~ 54535543 (-)
G20064 NA other downstream 428995 54366784 ~ 54368016 (-)
AMCG00017343 NA other downstream 651795 54127687 ~ 54145216 (-)
G20237 NA other upstream 31734 54837097 ~ 54838491 (-)

Expression


Co-expression Network