G10389


Basic Information

Item Value
gene id G10389
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2541724 ~ 2543612 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU12921
CccttataaaacattatattagaCCGATAGGCAAGGCCTAGTCTTCAGTGTGCCAGTGTCACTGACAGTGAAAGGCTCACCATTATACTCTTGCTGTTGAGATAGTGTCGGGGGATCATGGGCTCCAATGTGTGTAGAAAAGCCATCCCACAGGCGATGTCCAGAGCAAACTTTACTGCCTGAGTCTGGTCAACCACGAAATCTGATGCAGAGAAGACCATGGACATTGAGATggtgaaagaaaagagaaaattataaattagttGGAGAATAGGTAATGTAATAAATGCTGCTTCTGCATCGGGATATACATGAGTACTAGAGAATTAACCTGGACATTGTCCCTTTTTTGTATATCTTCTAGACCAGACAAAGTCAAATAGATTTTTTAGCACAATCAGATAGTTAATTGGTTTTATTAACCTATAGCTTAAGGTTTTGCCCACTActcctaaaataaatgtttttacactACACCATCTAATCCCGGGTTGAGTGGACCTGAGGCAGCCCCTGGGTGACTCACCCCTGAGTTCAGCCCTGCTTGCATTCACATTTGCCTTGTGTTACAATACACAGGTTATGGTTTGCCCCAGGGCTGGACACTACATATCAACCCAGGTCAAATACAGTGACTGGGAGACAATTTACAGGTTTTTTACTCACCGCTCAGTTGAGTACAATTGTAATATTTCCATCATCTTTTTTTGCGATTTTTTTTTCTCGCAGCACTGAGATGAACTTCTGTTGTACCTGGCACTCTGCATGGCAGCCGACAATTGTACGAACacttaaattgcattttgttcCATTCATCCGTCTCTGGATATTTTCATTGGCCCATATCCTGACCAACTCAGACTTCATTTTCACACCATAGCTCTTGccatttttattaacaaatgcacacacatgcatgacCCTTGCTccttgacatttgtttttgtgtatccCTGTTGCAATAGACTAATGTTGTTCATCTCGAGGTGAGCGCTTCATCCTGGGTTGGAAATCCCAACCCTAATTTCTAGCAGGGGCAAGTTCACCCCGGATCCAGAGTTTCATCTCgggttgaaaatgtaaatgtgaaagcACTTGATTTTCATCCTGGGGTCACCTATGGTTGAACTGtctagtgtgaaagcagcttAAGTAAATTATCCCTTAAATTTTTCCAAGGAATATTCAGTGCTTCTTGAGTTTAAAGGCATTGTATAAAGCACATTAACAGATGGAAGCCGATGCTCTAGTTAAGGGAAAAGGCAGTTATatttaataactaagtgtttGAATACTTCCAATGTTTATTGTAACTGGTCTAACAATCATTAACAATGGAATAGATGGGGAGGGCCAGTATTTGAGTATACATGGCCTGGTCCATAAAGATCCTGCGTTCTGAACCTCTGAGGTTCCTTGGTGCAGGAATTATGTACAGGCTGGTATATTCACCATGCAGGTCAGCCTGTTACAATGATTTTAGAATGAAAAAAACTTTGCCgttattaattaaatcattaaaacaaatcattcaaTTAACAAAAGCAATTGAGCCATTTCACCCCAGGTCGAAAATGTGGAACACTGGGCTTCAAACCCTGCCTGGAACACCAAGCTGTGTGCTGTACTTACTTGTCCCTTCATGCAGCACATTGTAGAGTGAGCCATAGGGCATCCAGTGTGTGATGATGATGGCGTGGGGGGCAGGTGGGGACTGGCAGGCACCCAGCATGGGTAGCACATTGGGATGGGAAAATATCCTGGAAAGGAGGGAAACGGAACAGAAGGTCACAATAAAACCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12921 True 1803 lncRNA 0.39 2 2541724 2543612

Neighbor

gene id symbol gene type direction distance location
AMCG00016021 NA coding upstream 172244 2171709 ~ 2369480 (+)
AMCG00016015 NA coding upstream 1506502 1009788 ~ 1035222 (+)
AMCG00016017 robo2 coding upstream 1545562 955648 ~ 996162 (+)
AMCG00016016 LOC106613191 coding upstream 1742355 789186 ~ 799369 (+)
AMCG00016014 NA coding upstream 2271804 257227 ~ 269920 (+)
AMCG00016025 NA coding downstream 28957 2572569 ~ 2596847 (+)
AMCG00016034 NA coding downstream 392343 2935955 ~ 2946364 (+)
AMCG00016031 NA coding downstream 454254 2997866 ~ 2998285 (+)
AMCG00016032 NA coding downstream 455071 2998683 ~ 3054898 (+)
AMCG00016033 NA coding downstream 511396 3055008 ~ 3060444 (+)
G10372 NA non-coding upstream 52040 2488761 ~ 2489684 (+)
G10356 NA non-coding upstream 116243 2425085 ~ 2425481 (+)
G10352 NA non-coding upstream 124938 2366631 ~ 2416786 (+)
G10345 NA non-coding upstream 283992 2257313 ~ 2257732 (+)
G10342 NA non-coding upstream 291097 2250426 ~ 2250627 (+)
G10419 LOC101154678 non-coding downstream 166801 2710413 ~ 2710752 (+)
G10421 NA non-coding downstream 171132 2714744 ~ 2716077 (+)
G10423 NA non-coding downstream 173274 2716886 ~ 2717183 (+)
G10431 NA non-coding downstream 192560 2736172 ~ 2736476 (+)
G10479 NA non-coding downstream 492572 3036184 ~ 3036419 (+)
G10371 LOC105010782,LOC106603266 other upstream 53973 2485542 ~ 2487751 (+)
G10350 NA other upstream 228565 2312598 ~ 2313159 (+)
AMCG00016030 NA other downstream 215735 2759347 ~ 2812231 (+)
G10739 foxo1 other downstream 1883534 4427146 ~ 4428059 (+)
AMCG00016079 NA other downstream 4098046 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 4120474 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 4478535 7022147 ~ 7024851 (+)

Expression


Co-expression Network