G10419 (LOC101154678)


Basic Information

Item Value
gene id G10419
gene name LOC101154678
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2710413 ~ 2710752 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU12953
cacagtggcctccatcatccgtaaatggaagaagtttggaaccaccaggactcttcctagagctggctgcccggccaaactgagcgatcgggggagaagggccttagtcagggaggtgaccaagaacccgatggtcactctgacagagctccagcgtgtctctgtggagagaggagaaccttccagaagaacaaccatctctgcagcactccaccaatcaggcctgtatggtagagtggccagacggaagccactcctcagtaaaaggcacatgactgcccgcctggagtttgccaaaaggcacctgaaggattctcggaccatgagaaacaaaattctc

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12953 True 340 lncRNA 0.51 1 2710413 2710752

Neighbor

gene id symbol gene type direction distance location
AMCG00016025 NA coding upstream 113566 2572569 ~ 2596847 (+)
AMCG00016021 NA coding upstream 340933 2171709 ~ 2369480 (+)
AMCG00016015 NA coding upstream 1675191 1009788 ~ 1035222 (+)
AMCG00016017 robo2 coding upstream 1714251 955648 ~ 996162 (+)
AMCG00016016 LOC106613191 coding upstream 1911044 789186 ~ 799369 (+)
AMCG00016034 NA coding downstream 225203 2935955 ~ 2946364 (+)
AMCG00016031 NA coding downstream 287114 2997866 ~ 2998285 (+)
AMCG00016032 NA coding downstream 287931 2998683 ~ 3054898 (+)
AMCG00016033 NA coding downstream 344256 3055008 ~ 3060444 (+)
AMCG00016036 NA coding downstream 437036 3147788 ~ 3164940 (+)
G10389 NA non-coding upstream 166801 2541724 ~ 2543612 (+)
G10372 NA non-coding upstream 220729 2488761 ~ 2489684 (+)
G10356 NA non-coding upstream 284932 2425085 ~ 2425481 (+)
G10352 NA non-coding upstream 293627 2366631 ~ 2416786 (+)
G10345 NA non-coding upstream 452681 2257313 ~ 2257732 (+)
G10421 NA non-coding downstream 3992 2714744 ~ 2716077 (+)
G10423 NA non-coding downstream 6134 2716886 ~ 2717183 (+)
G10431 NA non-coding downstream 25420 2736172 ~ 2736476 (+)
G10479 NA non-coding downstream 325432 3036184 ~ 3036419 (+)
G10487 NA non-coding downstream 385224 3095976 ~ 3096205 (+)
G10371 LOC105010782,LOC106603266 other upstream 222662 2485542 ~ 2487751 (+)
G10350 NA other upstream 397254 2312598 ~ 2313159 (+)
AMCG00016030 NA other downstream 48595 2759347 ~ 2812231 (+)
G10739 foxo1 other downstream 1716394 4427146 ~ 4428059 (+)
AMCG00016079 NA other downstream 3930906 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 3953334 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 4311395 7022147 ~ 7024851 (+)

Expression


Co-expression Network