G10421


Basic Information

Item Value
gene id G10421
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2714744 ~ 2716077 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU12955
tttgttttaaatgtcacaccGATACAATGAATAAACAACAGATCATCTTCTTCTTTAGATCTGCTACACGTGACAGCTTCTTCTTGCCATAAATCTACCGGACAGCTTTAATCAGTGCAAGTGAGTGGGTAATTTCAGAGAGGCACAGTATTGCTCTCTTTAGCTCCTATGCTGTTTTGAGCAGTCTGTCTGGGAGTTCAGCTCGCAGCAGGTGCCACGTCTCACTCAGTGAGGAGTGTCAGGGGCCTGTGTGGTGCTGTTGCTGGGTATTGTCTGACTGCTATGTTCTGGAAGGGCACTGCCTTCAACAGGCAGAGGGATGCTCTGGTCAGGAGAAGTGCCTGCCCTGGATGCCTGTGCCATCTGCTCCGCCTTGCTCTCGTACTCCGCCAGTCTCCGCTGCACAATGCCAGGCATGAGCTGGACATAGGTGGCCATGAGCCGGTGATTGGAGCGAATCAGCTTACCAGCACAGCTGTCCAGACAATGCTCTCCATTGTCATTGTCCTGTAGTTCAGGTTATTTGTGCAGCGCTGGAAACAGATTTCTGTCATCTTATTGTAAACCAGGAGAAAATCCCTTAGCTGAAACAAaagataattttaataattttgcgaacaattcattatttttgctcACTGTGAGCCAATATCAAGTCTAAATTATCATATCTTCGACGTATATTATGATCATATGCCCGGTCCTTCCGCAATAGAAAAATAACGATTaacttaaatatatgtatgaagTACCACTGCAGCGATGAACTACATGGATTATTTAGCTATTAATAACATGTAATAACTCCG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0005739 mitochondrion cellular_component
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU12955 True 809 lncRNA 0.42 2 2714744 2716077

Neighbor

gene id symbol gene type direction distance location
AMCG00016025 NA coding upstream 117897 2572569 ~ 2596847 (+)
AMCG00016021 NA coding upstream 345264 2171709 ~ 2369480 (+)
AMCG00016015 NA coding upstream 1679522 1009788 ~ 1035222 (+)
AMCG00016017 robo2 coding upstream 1718582 955648 ~ 996162 (+)
AMCG00016016 LOC106613191 coding upstream 1915375 789186 ~ 799369 (+)
AMCG00016034 NA coding downstream 219878 2935955 ~ 2946364 (+)
AMCG00016031 NA coding downstream 281789 2997866 ~ 2998285 (+)
AMCG00016032 NA coding downstream 282606 2998683 ~ 3054898 (+)
AMCG00016033 NA coding downstream 338931 3055008 ~ 3060444 (+)
AMCG00016036 NA coding downstream 431711 3147788 ~ 3164940 (+)
G10419 LOC101154678 non-coding upstream 3992 2710413 ~ 2710752 (+)
G10389 NA non-coding upstream 171132 2541724 ~ 2543612 (+)
G10372 NA non-coding upstream 225060 2488761 ~ 2489684 (+)
G10356 NA non-coding upstream 289263 2425085 ~ 2425481 (+)
G10352 NA non-coding upstream 297958 2366631 ~ 2416786 (+)
G10423 NA non-coding downstream 809 2716886 ~ 2717183 (+)
G10431 NA non-coding downstream 20095 2736172 ~ 2736476 (+)
G10479 NA non-coding downstream 320107 3036184 ~ 3036419 (+)
G10487 NA non-coding downstream 379899 3095976 ~ 3096205 (+)
G10528 NA non-coding downstream 564334 3280411 ~ 3281165 (+)
G10371 LOC105010782,LOC106603266 other upstream 226993 2485542 ~ 2487751 (+)
G10350 NA other upstream 401585 2312598 ~ 2313159 (+)
AMCG00016030 NA other downstream 43270 2759347 ~ 2812231 (+)
G10739 foxo1 other downstream 1711069 4427146 ~ 4428059 (+)
AMCG00016079 NA other downstream 3925581 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 3948009 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 4306070 7022147 ~ 7024851 (+)

Expression


Co-expression Network