G11197


Basic Information

Item Value
gene id G11197
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7520198 ~ 7521580 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU13861
TCTTGATTGCAAAAaatccacttaaaaaaaataataattatgaacaaACAATATTCTGGCCTCAGTGTAATTGCTGGGTATTCACAGATTTGCACAAAGGTTACAATGCACATGGGTTCTAAAGCATGGGTTTTTCTACttaggaaaatacattttacagcaagCTAACAAGCATACAATGTCTTTGTAAAGTCCTAGTGTCAAAGCAGACCATTTAATAAGTTAAAGATCATTTAAAACACTCAAGACTAGcacctttacaaaacaaatttatacatgatacaattacatagcaaaatactaaaataataataatacagtgccaGCACTTCAGGTTTCAGTGTGTTCACAACCtcctaaaactaaaacaaaaaaagtcaaaaagGTTTGCTTGAAAATCATATACATAAATTATAGGATTAAAAGAATGTACTGTTTGTTCTCACACTATCTTGCACCAAAAACACAGTATTGGAGCACTTCACAGCTCATGTACTAATATtgttaagaaataaacatttaacatttaagtcTACAGTGATTATTTACAtggcacatttttaaagaacatttcaACCAGGCTTTAATTTCATGGTAATATAGCCAAGTTTTTAATCACTTGACTACAATTTCCTTTACTCTGCCTTGTGTCCGATGGGTTAGGTGgacaaaacagtttttcagcGTGGTCAGCACTGAACAAAGCGGTAATTGAAAATGGACagaagtcattttatttttggtgtggTTCACGGTCAAAAATGTTTCATACTAATTTAGATGTTTTCTCCATGGTCTATTACAATAGTTGTTTACAGTAGAGAACTTaattttatcatttatattaatCTGGGGGGAAAAATAGAAGTCATATCACTGCATTAATTTTCTGATTTCTGtattcccccctcccccatctcttaaaaacactattaaaaaaagcaaacctcAATATGAGGGATGTTCAATAAGTAGCATTCAGAGGAGCCTATAGTGGCCTCTTGGGGATGGAGGActgaaaacagattaaaaatcCAAAAGCTGAGTAAAACACAACACCCAAGCTATATTGTAAcgcaaaagtacaaaaaaatgcTGTGCAAAAagcaatgtaacatttttttttatttagattcaatgaaaaatgtattggtaaaactaaaaaaaaaaaaaaaaaaaaaacattctgtaagACTTCAGAAATACAGATCCTTATAACAAAAAGGTAATTTTAAACCAAATTCAAAGCTGAGGTTTTAAAGTTGGTAATGCggttttaatatacactcacctaaaggattattaggaacacctgttcaatttctca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13861 True 1327 lncRNA 0.42 2 7520198 7521580

Neighbor

gene id symbol gene type direction distance location
AMCG00016100 NA coding upstream 101720 7403724 ~ 7418478 (+)
AMCG00016099 arfip2b,LOC103365243,LOC108276920,LOC107718740,LOC107555180 coding upstream 123939 7366296 ~ 7396259 (+)
AMCG00016102 dchs1,LOC103363423,LOC105909256 coding upstream 330082 7187185 ~ 7190116 (+)
AMCG00016098 NA coding upstream 409349 7102201 ~ 7110849 (+)
AMCG00016104 NA coding upstream 466650 7047120 ~ 7053548 (+)
AMCG00016109 trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445 coding downstream 275345 7796925 ~ 7812179 (+)
AMCG00016115 NA coding downstream 325781 7847361 ~ 7871509 (+)
AMCG00016116 NA coding downstream 492239 8013819 ~ 8030218 (+)
AMCG00016117 alg5,LOC102793295 coding downstream 513323 8034903 ~ 8044945 (+)
AMCG00016112 NA coding downstream 527212 8048792 ~ 8051720 (+)
G11195 NA non-coding upstream 8992 7510835 ~ 7511206 (+)
G11168 NA non-coding upstream 39168 7479606 ~ 7481030 (+)
G11098 cunh21orf59,c10h21orf59,LOC107577665,LOC107691672 non-coding upstream 464477 7053960 ~ 7055721 (+)
G11069 NA non-coding upstream 529298 6990649 ~ 6990900 (+)
G11067 NA non-coding upstream 529629 6990127 ~ 6990569 (+)
G11202 NA non-coding downstream 5467 7527047 ~ 7597325 (+)
G11210 NA non-coding downstream 99282 7620862 ~ 7621557 (+)
G11226 NA non-coding downstream 236895 7758475 ~ 7758725 (+)
G11246 NA non-coding downstream 445408 7966988 ~ 7967311 (+)
G11248 NA non-coding downstream 446014 7967594 ~ 7967898 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 41612 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 218156 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 495347 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 854650 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 858530 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 1546701 9068281 ~ 9089033 (+)
G11509 NA other downstream 1577840 9099420 ~ 9100036 (+)
G11545 NA other downstream 1701832 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 2037884 9559464 ~ 9591649 (+)
G11660 NA other downstream 2077235 9598815 ~ 9599156 (+)

Expression


Co-expression Network