G11202


Basic Information

Item Value
gene id G11202
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7527047 ~ 7597325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU13871
ATTTCAGTCTCTTACTGAAATTAACATATCACCGAGTTAGGGCTGTAGGAGATATGTGGATACAAATGACATAACAAATGAAgctgtaacaaaatacatatgaGGAGGAAACACTTAAGATTATAAGGATGCAATACTATGAATAAATTGTGTTACACTATAGATTGCATAGCATTCCTATTTTTTACATGAAATGTGGCATAATATAAAGACACACAGCACCAGAAAAATacaagataaacaaaacaaaaaacaaaaaaccttgtTTGAGTTGTGTTCAAAAGTGCAGCGGTTAAACATGgtgttaaaaaatgaatcaatatcaataataaatgttatctACTAccagtcttaaaaaaaaaaaaaatcttcaaaacaCTGAGCTGAAGTACTTGTCATGGTAAGGTAATGGTGTAATACAGAAGCTTTTAAAAAGGAGTGATCTCTTCTGATTTTACATAAGAATTATTTTAGTTCAGATTAATGGAGTCAATTCTGACACTGCAGTACGCCTACAGTATTTTATCACACTGATATATCTATTGGAGTTTTCATAACTGACAGAAAAACTGTCAAGACATTGCAAACCTTCTatctttgatatatatattcctgtttATTCTATTTACTCCTGTTGGGAGTGTATTGCTTACTGTCTCTTTATTGAACCTTCAGACTAATATCATGGGACCCAGTTTAAAAAATTTGAAGAGAACACTTACTAAAAACGAGAAGGTCTTCTGCAAAGTGTGATGTTAtctgtcattctctctctcaatcgCTTAGTTTTTCTGTAAAGTAGGTTACTTGATATGCAGTAGGTAAATGTGTAATAAGCCTGACTTTATGGTGAAacaatttaagaaacaaatttaaaaatggtgGGTGTATAACTATATAACATATATTGACCTACCTCTGTAGATAAATGAATGTGCAGCGATAATACTTGTAATACCATTTGCACCACTAATCCAGTACAATAATTGCTGTCAGTTTTAAAAGGACAGTGCTTTGTGTATATACAATcaacttcttttttttccctttaacagATTCACACAAAATTTCCTTGAAGCAAAACCTCTTCAGAATAATCCTTTTCAGTGACTTTTAGGTTACAACAGTGTCAAAGACCTTGACAAACAACGTGACGAAAAAACAGTGAATTACACCGAATGTGTGGCTCTGAGTCAAAATTAACTTTAATATCCATGTCAAAACAATGGTCGTCTGATGGTTTTTGGAAGTAACAACATGAGAAACtacatgcaaaattaaatgGCTCCTACAAAGATGCATTAGAttgcttaaaaaataacaaacaaaaatagtgGTTTATACACAATAGTGGTTTTTCAAAGGGCACAATTATTATGCCTTTTTTAATCCCCAAAACTAGGGGTTTAAGTGAAGCTGCTCCTACTGGATCTGAAACTGCAATGCAGCAGCCCAGCTGTCTTGATTGCTATCCTTCAGCAGCGATTGATCACCGCTCTTGGCATTCTAAAATCAGTGCGTAATTCTCAAAACCAGAATGGAACAAATCACAGTCTTCTCAAAATATGaactgtataatttaataataataataataataataataataatGATAATAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13871 True 1621 lncRNA 0.32 2 7527047 7597325

Neighbor

gene id symbol gene type direction distance location
AMCG00016100 NA coding upstream 108569 7403724 ~ 7418478 (+)
AMCG00016099 arfip2b,LOC103365243,LOC108276920,LOC107718740,LOC107555180 coding upstream 130788 7366296 ~ 7396259 (+)
AMCG00016102 dchs1,LOC103363423,LOC105909256 coding upstream 336931 7187185 ~ 7190116 (+)
AMCG00016098 NA coding upstream 416198 7102201 ~ 7110849 (+)
AMCG00016104 NA coding upstream 473499 7047120 ~ 7053548 (+)
AMCG00016109 trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445 coding downstream 199600 7796925 ~ 7812179 (+)
AMCG00016115 NA coding downstream 250036 7847361 ~ 7871509 (+)
AMCG00016116 NA coding downstream 416494 8013819 ~ 8030218 (+)
AMCG00016117 alg5,LOC102793295 coding downstream 437578 8034903 ~ 8044945 (+)
AMCG00016112 NA coding downstream 451467 8048792 ~ 8051720 (+)
G11197 NA non-coding upstream 5467 7520198 ~ 7521580 (+)
G11195 NA non-coding upstream 15841 7510835 ~ 7511206 (+)
G11168 NA non-coding upstream 46017 7479606 ~ 7481030 (+)
G11098 cunh21orf59,c10h21orf59,LOC107577665,LOC107691672 non-coding upstream 471326 7053960 ~ 7055721 (+)
G11069 NA non-coding upstream 536147 6990649 ~ 6990900 (+)
G11210 NA non-coding downstream 23537 7620862 ~ 7621557 (+)
G11226 NA non-coding downstream 161150 7758475 ~ 7758725 (+)
G11246 NA non-coding downstream 369663 7966988 ~ 7967311 (+)
G11248 NA non-coding downstream 370269 7967594 ~ 7967898 (+)
G11287 NA non-coding downstream 496475 8093800 ~ 8095204 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 48461 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 225005 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 502196 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 861499 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 865379 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 1470956 9068281 ~ 9089033 (+)
G11509 NA other downstream 1502095 9099420 ~ 9100036 (+)
G11545 NA other downstream 1626087 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 1962139 9559464 ~ 9591649 (+)
G11660 NA other downstream 2001490 9598815 ~ 9599156 (+)

Expression


Co-expression Network