G11226


Basic Information

Item Value
gene id G11226
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7758475 ~ 7758725 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU13895
GATCTGCatagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaatcgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaatta

Function

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component
GO:0099023 vesicle tethering complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13895 True 251 lncRNA 0.38 1 7758475 7758725

Neighbor

gene id symbol gene type direction distance location
AMCG00016100 NA coding upstream 339997 7403724 ~ 7418478 (+)
AMCG00016099 arfip2b,LOC103365243,LOC108276920,LOC107718740,LOC107555180 coding upstream 362216 7366296 ~ 7396259 (+)
AMCG00016102 dchs1,LOC103363423,LOC105909256 coding upstream 568359 7187185 ~ 7190116 (+)
AMCG00016098 NA coding upstream 647626 7102201 ~ 7110849 (+)
AMCG00016104 NA coding upstream 704927 7047120 ~ 7053548 (+)
AMCG00016109 trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445 coding downstream 38200 7796925 ~ 7812179 (+)
AMCG00016115 NA coding downstream 88636 7847361 ~ 7871509 (+)
AMCG00016116 NA coding downstream 255094 8013819 ~ 8030218 (+)
AMCG00016117 alg5,LOC102793295 coding downstream 276178 8034903 ~ 8044945 (+)
AMCG00016112 NA coding downstream 290067 8048792 ~ 8051720 (+)
G11210 NA non-coding upstream 136918 7620862 ~ 7621557 (+)
G11202 NA non-coding upstream 161150 7527047 ~ 7597325 (+)
G11197 NA non-coding upstream 236895 7520198 ~ 7521580 (+)
G11195 NA non-coding upstream 247269 7510835 ~ 7511206 (+)
G11168 NA non-coding upstream 277445 7479606 ~ 7481030 (+)
G11246 NA non-coding downstream 208263 7966988 ~ 7967311 (+)
G11248 NA non-coding downstream 208869 7967594 ~ 7967898 (+)
G11287 NA non-coding downstream 335075 8093800 ~ 8095204 (+)
G11308 NA non-coding downstream 379990 8138715 ~ 8139223 (+)
G11363 NA non-coding downstream 674863 8433588 ~ 8475800 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 279889 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 456433 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 733624 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 1092927 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 1096807 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 1309556 9068281 ~ 9089033 (+)
G11509 NA other downstream 1340695 9099420 ~ 9100036 (+)
G11545 NA other downstream 1464687 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 1800739 9559464 ~ 9591649 (+)
G11660 NA other downstream 1840090 9598815 ~ 9599156 (+)

Expression


Co-expression Network