G11288


Basic Information

Item Value
gene id G11288
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8093800 ~ 8095204 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU13978
TGATGttgaataatataattttatttttcaatttgattaCTGCtgtatgcaaaaaaacaacaacaacattagtAACATTTGTGGTACACGTTTGATATTTCATATAAAGCTTTCTACACGTTCATTACATATCCTGGCAAGAAACCTCCACAATGTTCTCTGGGTGTAGAAACATGGAATACTGATTTCTCACAAACGTTGTCAGTTATCGTCAGACTGTGCTGTTCTGGAGAAATCACTGGGACTTGACTGACCCCATGCAAACAGACGAAAACATGACATGGGCCCTTGGGTGCCAGTATGTGTCCGTGTGTGTAATTAAagcataattgttttaaactaaACGAGCACAGTAGGCCCAGACACTAAAGCTGAATGCctaaaataagtacaaatacCATCAGGTAATTCAATGGatagttaaattaaatcagttacaACACAAAGTGGGAAACTGATTGTGTCAGTCAAATCCACCCCACCCCAGAGTATATAATTAGAATACCCccctacacaaacacacacctacatgtatttttaacaagcCACATCATTTACTGGCAACACCCTCATTCTCTTAACAgcctattaaaagaaaaaataaatcacttctAATTTTTGCTAGTACGATTTCATGGAAGGAATCCTTTACTATGTGCTAAGTGCtaattactgtattattcaATCTAACCAAAGGACTTTCAGGACTTTATTGCTTTCCCAAAAAACGAATGCACTGCAgtgggaggagaaaaaaagggGCAAAatgatgctttaaaatgtctaaCATTTAAGTATTCCAGCCAGGATGAAGGGAGCAAAAAAAGGCAGTGACACTTTGAAACAACCTGAATCCTACCTCACTCGCTACAGTTGCTGCATGCTGGATCTGTTCCacacaaatatgtttaaaatgaaagacaaaagcaGGCGAACGATAGGTTTACAAAGATGCACTGAAGAAACACTTTTCCGAAAGAAAAGATTACTTTTACTGCAGCTAAAAACATATCACATTTACAGATTACAGTATATCCCAACTTTTCATTAACTAATTTTCCTGCCTCTGGGTGGCGCCAATCTATTATCAAATGGCCACTACATTCTTACCTTACTCCAGGTTTCTACAAGACTAAATTCCCCCATCGGTGGAGTCATTTTATTCTACTGAAATTGAAACCTTTTTTATCTAGTAAACGAAGAATTTTCAACTAATCATGCCAAGGACTAACTTGTTATACGATACTGATGAcgtttttgctgttgtttttctggatgacattacattaaaatatatatacagagagatgagacaatcaaatcaaaccaaaaaatcataatgtatatatataatatacactcacctaaaggattattaggaacaccttactaatactgtgtttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13978 True 1405 lncRNA 0.38 1 8093800 8095204

Neighbor

gene id symbol gene type direction distance location
AMCG00016111 NA coding downstream 59048 8030925 ~ 8034752 (-)
AMCG00016107 frem2b,LOC106581006,LOC106612873,LOC108433801 coding downstream 477502 7608507 ~ 7616298 (-)
AMCG00016108 LOC107730863,LOC107704782,LOC103363427,LOC101479746,LOC102203644 coding downstream 519320 7529911 ~ 7574480 (-)
AMCG00016105 NA coding downstream 567546 7520166 ~ 7526254 (-)
AMCG00016106 NA coding downstream 585705 7473851 ~ 7508095 (-)
AMCG00016118 NA coding upstream 43530 8138734 ~ 8139063 (-)
AMCG00016125 NA coding upstream 260475 8355679 ~ 8357486 (-)
AMCG00016127 NA coding upstream 321046 8416250 ~ 8433185 (-)
AMCG00016129 LOC106612894,LOC102298628,LOC102206684,LOC101482631 coding upstream 339916 8435120 ~ 8494583 (-)
AMCG00016130 nbeaa,nbea,LOC107691681,LOC107588988 coding upstream 498886 8594090 ~ 8644348 (-)
G11247 NA non-coding downstream 126495 7967071 ~ 7967305 (-)
G11243 NA non-coding downstream 221031 7872417 ~ 7872769 (-)
G11216 NA non-coding downstream 472947 7620640 ~ 7620853 (-)
G11215 NA non-coding downstream 473803 7619698 ~ 7619997 (-)
G10956 NA non-coding downstream 1870571 6222863 ~ 6223229 (-)
G11300 NA non-coding upstream 29786 8124990 ~ 8125383 (-)
G11309 NA non-coding upstream 41210 8136414 ~ 8138670 (-)
G11314 NA non-coding upstream 78485 8173689 ~ 8173974 (-)
G11345 NA non-coding upstream 225493 8320697 ~ 8321042 (-)
G11346 NA non-coding upstream 230978 8326182 ~ 8331803 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 340363 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 3163900 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 4173297 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 4551264 3528842 ~ 3542536 (-)
G10478 NA other downstream 5058617 3034422 ~ 3035183 (-)
AMCG00016119 NA other upstream 24017 8119221 ~ 8124033 (-)
G11326 NA other upstream 96342 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 728341 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 2739208 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 3670948 11766152 ~ 11781547 (-)

Expression


Co-expression Network