G11308


Basic Information

Item Value
gene id G11308
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8138715 ~ 8139223 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14002
CATAACTCGAGAAATTACTTCAGGAGGAAAGAGAGGACACAGTGGATCTCTGCGATGACAAACTGCAGATCTCCAAATTGGTGAACGAGCTTCCTCCCTCGCTGGGGCATTCTGGGTAAGAGGAGCTGGAGGAAATTATGTTCTTGAGTCTGTGAAGTGCAATGACCAGCAGCATGAGGAGGAAGGCCAACAGGCTCAAAAAGATGGACACGTACACATAGACATTCTCCAGACGTTCGGATGAGGAATCCACAGCTGTTGATATGGAGGTGGGGATGATTTTCAGGAATGTCCCATTTTCAGGCCTGGAACTGTTGAAGTCTGCTGCCGAGAACTCCATGCCAGACATTTTGCAGGCTCATTTAGGAAACTTCAAGAGAACCTGCTTTCCGTGATTTATTCTTTTGCTTTCATACAGGAGTGCCAAATAATGAAAGTCATTCTGTTGAAGTAGCACGTTATTGTAGCTTTCTGACAGCAGACTGGAGATGGCTGCTGCAAATGCTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14002 True 509 lncRNA 0.46 1 8138715 8139223

Neighbor

gene id symbol gene type direction distance location
AMCG00016114 NA coding upstream 21339 8113021 ~ 8117376 (+)
AMCG00016113 smad9,LOC107728873 coding upstream 45916 8082145 ~ 8092799 (+)
AMCG00016112 NA coding upstream 86995 8048792 ~ 8051720 (+)
AMCG00016117 alg5,LOC102793295 coding upstream 93770 8034903 ~ 8044945 (+)
AMCG00016116 NA coding upstream 108497 8013819 ~ 8030218 (+)
AMCG00016121 NA coding downstream 35751 8174974 ~ 8178038 (+)
AMCG00016120 NA coding downstream 39484 8178707 ~ 8194672 (+)
AMCG00016123 NA coding downstream 59651 8198874 ~ 8202539 (+)
AMCG00016122 NA coding downstream 67616 8206839 ~ 8225134 (+)
AMCG00016126 dclk1,LOC105909296 coding downstream 87908 8227131 ~ 8234032 (+)
G11287 NA non-coding upstream 43511 8093800 ~ 8095204 (+)
G11248 NA non-coding upstream 170817 7967594 ~ 7967898 (+)
G11246 NA non-coding upstream 171404 7966988 ~ 7967311 (+)
G11226 NA non-coding upstream 379990 7758475 ~ 7758725 (+)
G11210 NA non-coding upstream 517158 7620862 ~ 7621557 (+)
G11363 NA non-coding downstream 294365 8433588 ~ 8475800 (+)
G11506 NA non-coding downstream 956570 9095793 ~ 9096050 (+)
G11507 NA non-coding downstream 957366 9096589 ~ 9096811 (+)
G11508 NA non-coding downstream 958046 9097269 ~ 9097927 (+)
G11510 NA non-coding downstream 961688 9100911 ~ 9101316 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 660129 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 836673 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 1113864 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 1473167 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 1477047 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 929058 9068281 ~ 9089033 (+)
G11509 NA other downstream 960197 9099420 ~ 9100036 (+)
G11545 NA other downstream 1084189 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 1420241 9559464 ~ 9591649 (+)
G11660 NA other downstream 1459592 9598815 ~ 9599156 (+)

Expression


Co-expression Network