G11572


Basic Information

Item Value
gene id G11572
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9330891 ~ 9333859 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14315
TTtcaggaggggaaaaaacactttattgaaACGTCATACAATACCTAAATTATAATATAAGGCCTATTGGGAACAAAACCACACGTCACCCACCCTCGTCATGAAAACTAAAAGCAGTCATATTAGACCAGAGAACTTGTGGTGGGTATCTCAGAAATCAGGTTATATATTATTTCGGACATCTAACTTAAAATTGTCAATGTTATGATgagatttttaaatgaaatgaccCACATAAATCAAGGTTTTctgatgtttgttttctaatatttgCTCCATTAAAATAggtttagatttgtatttctctgCTCTAATGTTTGAGTTTTTGACTTAATGGGACTTAATGTCAGTGTTgaagcaaaattaaacaaattgaactTTTGTACACATTATactgtgattttaattgttttcatctCTTAACTggtaatacatatatttttaatacacattattattatttcaatgggGCTCCCAATGCTTTTAAACTCCAGTCCTCAAAAAGGCCACAGAGCCTTCTGTTATTCAATCTGAGAGGAACGTATCATATGAGATTATTCAGGaattagatttttctgtatatacatttttacatttcatcatTTTTATGACTCACCTGATTCAGAGTATTATATACACCCTTGTGTTGCCTGAAGAACAATGGTATAGATTTTGTTGTGAAGACTCAGTACCCCTAGAGGAGTTTGATGCTCTTGAGCGAGCCAAGCATTATCACAGGCTATGGGGAAAAAACCTGAATCGTCAGCTGAGGAACCTTCAGAAAGCTTCAGCCATCTACGCTGAAACGTAAGCAGGTTCTGGGTCAATTCTTCAGTCCACCGCAAATCTAATGCAGATTTCTCAGGGAGGATTTGCAAGCACTCTCTCATTGGGGTCTCAGTGGAGGTTCAAGCTCGAAAGCAGCTGGTGGCTCCAAATTAGGGAAGAACAGGGGAATAACATTTGCTGGTTCTAACAGCTGGtgatttttttgtgattttttttctctgtggccTAATTGTCCGCAAAGGAAGCTTTTTGTCCGTGTCCTCGAATGCCCTGTCAGTGTTAATGCACCGGCGTAGCACTCCAGTCTGCAGGGGTGTATAGGAACACACCAGACTAGTCTTGGGTGTGAATTGTTACAGGATTCTAGGTGGATATAGTCATTATAAGTCCTCTCTCGTGCCTCTGTGTGGCGTCGGTGGCAACGTGTCGTTTTTGTCGTCCGCTAACCACTTGTGAAAGACACTCACGGGATCAATGTTCCAGTGCTTGTGGAAAGAGATGGGCACCTGGTGAGCAAGATAGTCTTTGGCATAATCTTCAGGTCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14315 True 1336 lncRNA 0.46 2 9330891 9333859

Neighbor

gene id symbol gene type direction distance location
AMCG00016143 NA coding upstream 44016 9237700 ~ 9286875 (+)
AMCG00016140 NA coding upstream 211453 9117902 ~ 9119438 (+)
AMCG00016135 LOC104923292 coding upstream 351986 8964206 ~ 8978905 (+)
AMCG00016132 LOC102798547 coding upstream 521856 8788969 ~ 8809035 (+)
AMCG00016128 mab21l1,LOC107730834 coding upstream 806351 8523461 ~ 8524540 (+)
AMCG00016145 NA coding downstream 62743 9396602 ~ 9406042 (+)
AMCG00016156 hmgb1,LOC105901051,LOC103353583 coding downstream 160603 9494462 ~ 9498792 (+)
AMCG00016157 katnal1,LOC107578067,LOC107697436,LOC107741157 coding downstream 176165 9510024 ~ 9521955 (+)
AMCG00016158 NA coding downstream 198243 9532102 ~ 9550216 (+)
AMCG00016160 NA coding downstream 323731 9657590 ~ 9658570 (+)
G11570 NA non-coding upstream 16457 9313998 ~ 9314434 (+)
G11511 NA non-coding upstream 226709 9103625 ~ 9104182 (+)
G11510 NA non-coding upstream 229575 9100911 ~ 9101316 (+)
G11508 NA non-coding upstream 232964 9097269 ~ 9097927 (+)
G11507 NA non-coding upstream 234080 9096589 ~ 9096811 (+)
G11672 NA non-coding downstream 630105 9963964 ~ 9964237 (+)
G11674 NA non-coding downstream 634683 9968542 ~ 9968783 (+)
G11678 NA non-coding downstream 675180 10009039 ~ 10009385 (+)
G11681 NA non-coding downstream 763839 10097698 ~ 10098122 (+)
G11684 NA non-coding downstream 802069 10135928 ~ 10136190 (+)
G11545 NA other upstream 104646 9223412 ~ 9226245 (+)
G11509 NA other upstream 230855 9099420 ~ 9100036 (+)
AMCG00016136 NA other upstream 241858 9068281 ~ 9089033 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 1852305 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 2028849 7269855 ~ 7302042 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 225605 9559464 ~ 9591649 (+)
G11660 NA other downstream 264956 9598815 ~ 9599156 (+)
AMCG00016174 NA other downstream 1510268 10844127 ~ 10958032 (+)
G11921 NA other downstream 2534966 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 2659113 11992972 ~ 12005952 (+)

Expression


Co-expression Network