Fish Transcriptome and Expression Database

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model fish

XLOC_006162 (BX005106.1)

Basic Information

Item	Value
gene id	XLOC_006162
gene name	BX005106.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	37674178 ~ 37674294 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012134
GTGCACAGCCATATCGCCCGGCAGCcaaagaccagttactcactgaagccaaACAGGGCTGAGCCTTGTCAGTACCTGGCAGGGAGACCACATCGGAAAACTAGGCTGCTAAAccta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106165

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00012134	True	117	rRNA	0.55	1	37674178	37674294

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006161	phf3	coding	upstream	602	37653851 ~ 37673576 (+)
XLOC_006160	NA	coding	upstream	129857	37538653 ~ 37544321 (+)
XLOC_006159	gphb5	coding	upstream	385069	37273010 ~ 37289109 (+)
XLOC_006158	esr2b	coding	upstream	601620	37022601 ~ 37072558 (+)
XLOC_006157	frmd6	coding	upstream	676417	36958086 ~ 36997761 (+)
XLOC_006163	BX322660.1	coding	downstream	476223	38150517 ~ 38150637 (+)
XLOC_006164	zgc:171579	coding	downstream	539400	38213694 ~ 38222714 (+)
XLOC_006165	NA	coding	downstream	551782	38226076 ~ 38284199 (+)
XLOC_006166	adgrb3	coding	downstream	628371	38302665 ~ 38305148 (+)
XLOC_006167	adgrb3	coding	downstream	756172	38430466 ~ 38593701 (+)
XLOC_006149	NA	non-coding	upstream	1679011	35989155 ~ 35995167 (+)
XLOC_006140	CU681845.1	non-coding	upstream	2152002	35483618 ~ 35522176 (+)
XLOC_006137	CR376850.2	non-coding	upstream	2704533	34969519 ~ 34969645 (+)
XLOC_006136	CR376850.1	non-coding	upstream	2790808	34883246 ~ 34883370 (+)
XLOC_006175	NA	non-coding	downstream	2010177	39684471 ~ 39727464 (+)
XLOC_006176	NA	non-coding	downstream	2170970	39845264 ~ 39873628 (+)
XLOC_006177	BX005216.1	non-coding	downstream	2295055	39969349 ~ 39969465 (+)
XLOC_006135	NA	non-coding	upstream	2689265	34752174 ~ 34984913 (+)

Expression

Co-expression Network