G11848


Basic Information

Item Value
gene id G11848
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11722068 ~ 11722558 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14641
CAGAGTGTCCACCCCCAACATGAACAGCATGAGGAAGAACAGAATGGACCAGAAAACTGATCCGGGCAGGAGAGCAAGGGCTTCTGGGTAGGCCACAAAAGCCAACCCGGGACCTACAGCAGGAAAAGAAGGAAAGGGGTGAGTTGATATTAAAATGCTACCGCAAAACTAAAAGCATAGTTTAAGCACGGGAACAATGTGAAATTGATCTCACTGCAGATTGACCTTGGGTTACCAATCTTTCTCTAAGACAGTCACAGCTTTTGGTAGCTGAATTCAAATGAGACTTCCACTCAACAGAACTACACTAAAAtcaaattattgtaatatagAAAAGCGGAGAAATGTCCACAGTGTCTAGTGCGAGTTACCGGTGTCCGCCACTTCTCCCACCGGAACATTCTTCCTCCAGGCCATGTGTCCCAGTATTGAGAAGATGGCAAAACCTGAAAAGAAACTGGTGGCACAGTTCCCAATGGTAATGACCAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14641 True 491 lncRNA 0.42 1 11722068 11722558

Neighbor

gene id symbol gene type direction distance location
AMCG00016190 LOC102214188,LOC103353587,LOC101465674 coding upstream 5028 11680800 ~ 11717040 (+)
AMCG00016186 NA coding upstream 78658 11627693 ~ 11643410 (+)
AMCG00016184 NA coding upstream 191709 11515756 ~ 11530359 (+)
AMCG00016180 NA coding upstream 331756 11389809 ~ 11390312 (+)
AMCG00016182 NA coding upstream 351928 11369362 ~ 11370140 (+)
AMCG00016193 NA coding downstream 11320 11733878 ~ 11741377 (+)
AMCG00016192 rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300 coding downstream 18925 11741483 ~ 11749371 (+)
AMCG00016191 NA coding downstream 28960 11751518 ~ 11764647 (+)
AMCG00016198 NA coding downstream 59622 11782180 ~ 11791632 (+)
AMCG00016196 NA coding downstream 74130 11796688 ~ 11800796 (+)
G11847 NA non-coding upstream 1660 11719779 ~ 11720408 (+)
G11846 NA non-coding upstream 2417 11718083 ~ 11719651 (+)
G11813 NA non-coding upstream 238275 11483562 ~ 11483793 (+)
G11798 NA non-coding upstream 413711 11308118 ~ 11308357 (+)
G11792 NA non-coding upstream 481264 11237358 ~ 11240804 (+)
G11849 NA non-coding downstream 639 11723197 ~ 11723601 (+)
G11850 sc6a7 non-coding downstream 4384 11726942 ~ 11727423 (+)
G11851 NA non-coding downstream 7042 11729600 ~ 11730226 (+)
G11905 NA non-coding downstream 94446 11817004 ~ 11819065 (+)
G11914 NA non-coding downstream 125727 11848285 ~ 11851621 (+)
AMCG00016174 NA other upstream 764036 10844127 ~ 10958032 (+)
G11660 NA other upstream 2122912 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2130419 9559464 ~ 9591649 (+)
G11545 NA other upstream 2495823 9223412 ~ 9226245 (+)
G11509 NA other upstream 2622032 9099420 ~ 9100036 (+)
G11921 NA other downstream 146267 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 270414 11992972 ~ 12005952 (+)
AMCG00016213 NA other downstream 712578 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 1055666 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1549026 13271584 ~ 13389636 (+)

Expression


Co-expression Network