Gene
RNA
| Item | Value |
|---|---|
| gene id | G11851 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 11729600 ~ 11730226 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016137 | glycoside metabolic process | biological_process |
| GO:0016139 | glycoside catabolic process | biological_process |
| GO:1901658 | glycosyl compound catabolic process | biological_process |
| GO:1901136 | carbohydrate derivative catabolic process | biological_process |
| id | description |
|---|---|
| ko00603 | Glycosphingolipid biosynthesis - globo and isoglobo series |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU14644 | True | 627 | lncRNA | 0.52 | 1 | 11729600 | 11730226 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016190 | LOC102214188,LOC103353587,LOC101465674 | coding | upstream | 12560 | 11680800 ~ 11717040 (+) |
| AMCG00016186 | NA | coding | upstream | 86190 | 11627693 ~ 11643410 (+) |
| AMCG00016184 | NA | coding | upstream | 199241 | 11515756 ~ 11530359 (+) |
| AMCG00016180 | NA | coding | upstream | 339288 | 11389809 ~ 11390312 (+) |
| AMCG00016182 | NA | coding | upstream | 359460 | 11369362 ~ 11370140 (+) |
| AMCG00016193 | NA | coding | downstream | 3652 | 11733878 ~ 11741377 (+) |
| AMCG00016192 | rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300 | coding | downstream | 11257 | 11741483 ~ 11749371 (+) |
| AMCG00016191 | NA | coding | downstream | 21292 | 11751518 ~ 11764647 (+) |
| AMCG00016198 | NA | coding | downstream | 51954 | 11782180 ~ 11791632 (+) |
| AMCG00016196 | NA | coding | downstream | 66462 | 11796688 ~ 11800796 (+) |
| G11850 | sc6a7 | non-coding | upstream | 2177 | 11726942 ~ 11727423 (+) |
| G11849 | NA | non-coding | upstream | 5999 | 11723197 ~ 11723601 (+) |
| G11848 | NA | non-coding | upstream | 7042 | 11722068 ~ 11722558 (+) |
| G11847 | NA | non-coding | upstream | 9192 | 11719779 ~ 11720408 (+) |
| G11846 | NA | non-coding | upstream | 9949 | 11718083 ~ 11719651 (+) |
| G11905 | NA | non-coding | downstream | 86778 | 11817004 ~ 11819065 (+) |
| G11914 | NA | non-coding | downstream | 118059 | 11848285 ~ 11851621 (+) |
| G11953 | NA | non-coding | downstream | 298073 | 12028299 ~ 12029121 (+) |
| G11988 | NA | non-coding | downstream | 476122 | 12206348 ~ 12207474 (+) |
| G12009 | NA | non-coding | downstream | 531825 | 12262051 ~ 12265709 (+) |
| AMCG00016174 | NA | other | upstream | 771568 | 10844127 ~ 10958032 (+) |
| G11660 | NA | other | upstream | 2130444 | 9598815 ~ 9599156 (+) |
| AMCG00016159 | ubl3,LOC107578048,LOC106604009 | other | upstream | 2137951 | 9559464 ~ 9591649 (+) |
| G11545 | NA | other | upstream | 2503355 | 9223412 ~ 9226245 (+) |
| G11509 | NA | other | upstream | 2629564 | 9099420 ~ 9100036 (+) |
| G11921 | NA | other | downstream | 138599 | 11868825 ~ 11871735 (+) |
| AMCG00016202 | NA | other | downstream | 262746 | 11992972 ~ 12005952 (+) |
| AMCG00016213 | NA | other | downstream | 704910 | 12435136 ~ 12461265 (+) |
| AMCG00016221 | NA | other | downstream | 1047998 | 12778224 ~ 12786899 (+) |
| AMCG00016241 | NA | other | downstream | 1541358 | 13271584 ~ 13389636 (+) |
