G11905


Basic Information

Item Value
gene id G11905
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11817004 ~ 11819065 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14703
TCAAACAAAGTTTTCAGTGACTTTTATTTCAGGGGGACAGTGAAAGATACAATGAGGAATGAGATTGTAAAGTGATAGAAAAACAACCAGTGTAGGAAAGCCTCCTAGCCTGTGTGCAATACCACAACTCTCCACAAGAGGCTACATGGTTAAAGACTGaacaaggaagaaaacaatcataatgaattcataaaatatattgaagGTATACCATTTTGTGCAACATGTGTATTACCCGAAGTATATGAGAATGTaagatgtatatttaaaaatgtatattatatatatatatatatatatatatgcatgcctCTAAATACTGGAAAAGTAATCTGTAACAAATTTAAATCTTATTCCTAATCAAATGtccatatactgtacatataacCAATGTATATGCCTCAACAAGCGACAGGACTGATATAGGTTATGTTTGGtctttaaaccatttaatcacacaagggggaaaaaaagcccaGTGAATCACATGAACtccaaaaaaaattaaatcaacattgTATGAAGTTAAAAAGGTTCATAACTGTGACCAGGAAGAAAAAgatgaacagaaaaatatatatacaattcgtgcaccaaatcaatatttgttccTTTTATTGTGGTAGTATTAATGAACTCACTTTGATATAGAAAGTTAGAATGAATCTACAGAAAGCTAAAACTCTTCCATCTGTGACAGTAAAATGGCTAACGACCCTTCCTGTTGGTGCACATGGCCTGTAGTCACATTACAGCAACTTCACaggaaataaactatttaaagaaGACAATTATCACTCTCCCCAGATACACTTCCAACTGCTCTTAAGCAGGAAATGGAGAAAGGCATTCCTTACAGTGACAATTGTCTGTTGTATTCAACTGCAATAGGAATAGAACTGTTTGAACAGATTGCTTCCAGAAACTCAGGGCAAAATCAATGCATTCAGTTTACCACAggttttttcagaaatgtaaaactctgatggaacaaaagaaaaagaaaaacacttaacgtgacccttaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaagatgcaACACTAAAGTCAGTGTGCCTTtcttagaaaaatacaaaaggatATGAAAGGACAAATTAGGTTTTAAACTCCAATGTACTGGTGCGGCCAGGGAATAGAAACCCTCGATCCTCTCAGCACAATTAGTAGTGTTTGCTCCTCTCCAGATACTGATGCAGTTTCTGCCTCCAGTCCATTTTGCATGATCAGATCTCAGACACCCATATTTTTAATGGGCTCCATGCTTTGTGAAAAGAATTGTATAGTTCCTATCAAAAAGCTTTGATGTAGAGATCACTTAAATCGGTCAAAATTCACAAAATTGTAGCAAAACAAGTTTTAAACCTGCAAAATCTCATAAAACTcatgtaaaattaaaaccacagcCATGCACTGGCAGACATTTAAAATCTGAAGTGTGTAAATATCAATATGAGCACTTTGGATCCGATGCAGGACGTCCTATAAAGCGGGCGGCTCCCACACGGGCTCTCTCAGCCGGGTCTGTTTAACAGCTGATTTGCACACAAGAGAGCAGGGGCAGTCAtttgacaatacaaaataatgcacagaacattttatttatgaaaaaatgcACTAAATAAGgggaataaaaatagaaaagataATGGAAAGATATTTacaaggggagggaggaggaggaatgggACAGCAGGTACTCCTGCCTCCACACCCCCCCAATGTTTAATTGCACATTACGCCACTGATTTTAGGATGTCCTTCCCAGCATCCTTAATTTGATTTAGCTGAATacgatattaaaaaaaacagataaaggTGTTGAAGCAGCTGCAGGATTGGGTTCAAGAGCGTCAGAGGATAGAAACGTAGCAATTGGAGCCTGGTGAACGAGGTGTCAGGAAGGGAACTGCCCGCCTTCACTTGCCCACATCTCCACCTCCTCCACAGTGTAGATTTACACCTTCATATTCTTCAGAGGTTTTCTAATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14703 True 2016 lncRNA 0.37 2 11817004 11819065

Neighbor

gene id symbol gene type direction distance location
AMCG00016196 NA coding upstream 16208 11796688 ~ 11800796 (+)
AMCG00016198 NA coding upstream 25372 11782180 ~ 11791632 (+)
AMCG00016191 NA coding upstream 52357 11751518 ~ 11764647 (+)
AMCG00016192 rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300 coding upstream 67633 11741483 ~ 11749371 (+)
AMCG00016193 NA coding upstream 75627 11733878 ~ 11741377 (+)
AMCG00016197 pcyt1b,LOC107590340,LOC107721854 coding downstream 18607 11837672 ~ 11847864 (+)
AMCG00016205 NA coding downstream 237635 12056700 ~ 12109384 (+)
AMCG00016206 NA coding downstream 354003 12173068 ~ 12205659 (+)
AMCG00016207 NA coding downstream 422578 12241643 ~ 12261142 (+)
AMCG00016215 NA coding downstream 566913 12385978 ~ 12397053 (+)
G11851 NA non-coding upstream 86778 11729600 ~ 11730226 (+)
G11850 sc6a7 non-coding upstream 89581 11726942 ~ 11727423 (+)
G11849 NA non-coding upstream 93403 11723197 ~ 11723601 (+)
G11848 NA non-coding upstream 94446 11722068 ~ 11722558 (+)
G11847 NA non-coding upstream 96596 11719779 ~ 11720408 (+)
G11914 NA non-coding downstream 29220 11848285 ~ 11851621 (+)
G11953 NA non-coding downstream 209234 12028299 ~ 12029121 (+)
G11988 NA non-coding downstream 387283 12206348 ~ 12207474 (+)
G12009 NA non-coding downstream 442986 12262051 ~ 12265709 (+)
G12032 NA non-coding downstream 504112 12323177 ~ 12328393 (+)
AMCG00016174 NA other upstream 858972 10844127 ~ 10958032 (+)
G11660 NA other upstream 2217848 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2225355 9559464 ~ 9591649 (+)
G11545 NA other upstream 2590759 9223412 ~ 9226245 (+)
G11509 NA other upstream 2716968 9099420 ~ 9100036 (+)
G11921 NA other downstream 49760 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 173907 11992972 ~ 12005952 (+)
AMCG00016213 NA other downstream 616071 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 959159 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1452519 13271584 ~ 13389636 (+)

Expression


Co-expression Network