G11914


Basic Information

Item Value
gene id G11914
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11848285 ~ 11851621 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14713
ttcagttttattttattttttatttttatcatctcGGGTAAAGTGGACATGTTCTGTCAAATCAGTATTGTTGCCATGACAAAgctctttttattttggcaaatcacaattaaaacagacatCTCTGCTCCACAGTTACAGATTATAAATGCTGTGTGATGGTGACAAACcatgaaaatgaacaaaccCATTATAATACACCCTCTCCCAGCCCCCAAATAAACCCTATACATCTCACTTCCCGAGGAGCTGCTATAACAAAATAAgtagggtatatatatatatatatattttcatatttttcctgAGCCTAGGGATTGGTTGAAGACATCTGAATCCCAGATCGGAACACTTCTCAACGCATCGCTTGCAATAACTTCAAACAAGCACGAAGGCTttcaaactgaataaaatgatTGGTCGATGTGCATGAGGCACTCTGCTGTACCTGTACAATGTTACTATAACACTGATCTCCTGTTACTTCTTTGAAGTTTAAGACAGCTGCGCAGTACAGGAACGATGTCCGCAGCACGGGTCTCAGACATCCACTAAATCCCACTGCCCTGGACCGCACGCCCCGATCTGTACCGGGAATGATACAGAGACGTGGGGCAAAATAATGCACAGGTCCTTGTCTTGGTGTGAGGACAGTGAGAGTCCAAACAGACTGCAGACTGATGTTACAACATCTAACATCACTTTTAattcataatcatcatcagcaCCTTTCTCagtcatttttttccttctgcaaaacaaaagtagTTCTTATGGTGACTAAGACACATTTAATCTACTCACAATGTAGAACCGGATGCACTGGTCATGAGAACACGGAAGACACATATGTAAAACAACTGTCACTAAGCAGTTTCTATTAGTTGTACATGCATTTTATGATGAACTTGAAGGGCTAGTGTGTGGATGCGTTACTGTTCCCCGACGCCATGGGAAAAGTACAGGACAACCCCACCATTCGGAGAGATCATGTGCGGATGTAATTTACCCTATTAACTGCAATTCAGTGGGAGACAAAAGGGACAATGCATGTTAAAACAAATGGCAGCAGCATGCTTGAATAACACCGAAGTAAtgccaaacacattttatacagGTTAAAATATGATACAGGGGATAGATTATCATTTGGTTGTTTATATACAGAAATTACTACAATTTCCATTGATGCCGATCAAGCAATAACACACCGTTTTATCCCACCCTTCCGCCTGGAAGaattcatattatattaaaaccaaaaattaataaattaacaaaaaaagccaaacaaaacaatcaaatcactCAGCTTCAGTCAGTTATGAAAATTTTAAAATCGGGGAGTTTTTGGTTGTGATGTGTGATGATAACCGCAGGTAAAGGTACTAAGGTGGAAAATACATGATTATTATCGTTAATAATAAGGTATTAATCCAACTCTTGATTGGAGAATTTATGTCTGAACCACTGCtaagaataatatattatatactaaGCCAATCAGACAGCTGTTTTAGATATTAATACTAGCAGGCTTGCTGAATatagaaaaacatacaaatgcaggctgcagcaatttaaaatgtatctatcCAGAGTTTTGTTGAGGAGACTTCAAAATACAAGCTTTATATGAAGAGCACATCAAGTCATTCATAGTTAACTTTGTACCATAGTTTTTAGAAGATCAGACCACAACTGAATGCAAACTTCATAGCTTCCTCAAAACTAAACTGCACGCactatttcaaatgcaattcaCAAACAACTGTGCAGCAATTCAGTAGATTTGATAGGGATGAACTCAGAGGGTCAATCACACTGTACTCTTTATGGGCCAGGAGGAAAGGATAATGATGTCATCAACCTGTAGGGACACCTCTTCCTCTGGGAAGCCAAGACCTTGTGCATCATGAACAGCGACCTGTAATAACCCTGCTTTACCAGCTCGGTCCTCAAGCTTCCTCCTCAATCTGAACCCAACATACTGGGTGAATCTCAAAAACTAAACCTCCCTTTCATTACAGTTTCAAAAGGGTTTATTAAAGCATTTTGCAgctcctttaaaaaataaaaatgaaaataaaatagtcaaGTTACACGTCCCCTACAGATACCACCCTTGAGATAAGGTGCATGATAACAGTGGCAGTGGAAGACTTATTCTCTGCTCAAAAGTCTTCATCCGATTCCTCCATGTAAATTCCCTTCCTCTCAGCTCAAGTAAGATGCATCGATTGCTCAGATGTTTTGCAGTGAACACCAATGGAAGAGACTGGAGTTCCCACCCCTACAATTATAGCAAGCAGCCGTCTGCGAGGCGTTTTCTTGTGCAATCATCAAATAATAGCAATATTCTCTTTAACATGAAGACTCTAAAACATCccacaaatgaacaaataaaagcagTGCAAGAAAAATGTCCAACTGCTGTAGCATTACAGCAATTCTATAAATAcccatatacatacatgtgtatattataaatattcttTCAAATTGTCAAAACATAAGgtgcttttcattgttttacagcAGGAGAACTTTCCATGCCCCCCAAAGACCCTCATATTTACCAAATCGACCACAGTGAGCTATAATATTCTACAGTGAAAAGCCTTCTCAAATCCAAGGAATATCATTCTTCAAAAATCATCCAACGAAAATCATTCATACCTCCAGCAATCTgagtcgtgtgtgtgtgcgcttcaGAAAGGCAATCAAACACTTCAGCTAGGACTGAACAAATACCAAAAGATTTCTGCACACGAGAtttggaataaaaaacagaaaacgcACATATCTGTAATACTACAAAAAAGGATAATTCTCTAATCTTTTGCAAAAGCACAAgatcacaacaaaacaaagtgccGTTGCACAATTTTTCCCAACTGACAAGCTACTCTGTActtgtctgtattttttttttttctctcacacaaGTAGGGGAAGAGTCCATTTCAAATACTAAACATGTTGACACCAACATGCTGACGGTCTCTCGCCGTGTGGAGGACTACTTGAAAATGGAAACGTCGACTATTACAAGACACTGGATGCTGATATTAATAGAACCGTCATCACTGTCGTTTCGTATTTGCATGGGACCGGAGTCGGGCCGGCGGTCTCTACGGCGAGAGGGGATGCAGGTGGCGTTGTGGCGGGGGAGTTATCGGTTGGCTTTGTACTTGGAGGCATCTCGAGGCTCACTGCTCGGGTTGCTCCAGTCGTCGGCCTCGGGGCTGGTCTGGTAATGCCGCCACGCCGACTTGTTGAACACAGGGAGGCGCTCAAAGGATTCGCTGGAC
>TU14714
ttcagttttattttattttttatttttatcatctcGGGTAAAGTGGACATGTTCTGTCAAATCAGTATTGTTGCCATGACAAAgctctttttattttggcaaatcacaattaaaacagacatCTCTGCTCCACAGTTACAGATTATAAATGCTGTGTGATGGTGACAAACcatgaaaatgaacaaaccCATTATAATACACCCTCTCCCAGCCCCCAAATAAACCCTATACATCTCACTTCCCGAGGAGCTGCTATAACAAAATAAgtagggtatatatatatatatataatttcatatttttcctgAGCCTAGGGATTGGTTGAAGACATCTGAATCCCAGATCGGAACACTTCTCAACGCATCGCTTGCAATAACTTCAAACAAGCACGAAGGCTttcaaactgaataaaatgatTGGTCGATGTGCATGAGGCACTCTGCTGTACCTGTACAATGTTACTATAACACTGATCTCCTGTTACTTCTTTGAAGTTTAAGACAGCTGCGCAGTACAGGAACGATGTCCGCAGCACGGGTCTCAGACATCCACTAAATCCCACTGCCCTGGACCGCACGCCCCGATCTGTACCGGGAATGATACAGAGACGTGGGGCAAAATAATGCACAGGTCCTTGTCTTGGTGTGAGGACAGTGAGAGTCCAAACAGACTGCAGACTGATGTTACAACATCTAACATCACTTTTAattcataatcatcatcagcaCCTTTCTCagtcatttttttccttctgcaaaacaaaagtagTTCTTATGGTGACTAAGACACATTTAATCTACTCACAATGTAGAACCGGATGCACTGGTCATGAGAACACGGAAGACACATATGTAAAACAACTGTCACTAAGCAGTTTCTATTAGTTGTACATGCATTTTATGATGAACTTGAAGGGCTAGTGTGTGGATGCGTTACTGTTCCCCGACGCCATGGGAAAAGTACAGGACAACCCCACCATTCGGAGAGATCATGTGCGGATGTAATTTACCCTATTAACTGCAATTCAGTGGGAGACAAAAGGGACAATGCATGTTAAAACAAATGGCAGCAGCATGCTTGAATAACACCGAAGTAAtgccaaacacattttatacagGTTAAAATATGATACAGGGGATAGATTATCATTTGGTTGTTTATATACAGAAATTACTACAATTTCCATTGATGCCGATCAAGCAATAACACACCGTTTTATCCCACCCTTCCGCCTGGAAGaattcatattatattaaaaccaaaaattaataaattaacaaaaaaagccaaacaaaacaatcaaatcactCAGCTTCAGTCAGTTATGAAAATTTTAAAATCGGGGAGTTTTTGGTTGTGATGTGTGATGATAACCGCAGGTAAAGGTACTAAGGTGGAAAATACATGATTATTATCGTTAATAATAAGGTATTAATCCAACTCTTGATTGGAGAATTTATGTCTGAACCACTGCtaagaataatatattatatactaaGCCAATCAGACAGCTGTTTTAGATATTAATACTAGCAGGCTTGCTGAATatagaaaaacatacaaatgcaggctgcagcaatttaaaatgtatctatcCAGAGTTTTGTTGAGGAGACTTCAAAATACAAGCTTTATATGAAGAGCACATCAAGTCATTCATAGTTAACTTTGTACCATAGTTTTTAGAAGATCAGACCACAACTGAATGCAAACTTCATAGCTTCCTCAAAACTAAACTGCACGCactatttcaaatgcaattcaCAAACAACTGTGCAGCAATTCAGTAGATTTGATAGGGATGAACTCAGAGGGTCAATCACACTGTACTCTTTATGGGCCAGGAGGAAAGGATAATGATGTCATCAACCTGTAGGGACACCTCTTCCTCTGGGAAGCCAAGACCTTGTGCATCATGAACAGCGACCTGTAATAACCCTGCTTTACCAGCTCGGTCCTCAAGCTTCCTCCTCAATCTGAACCCAACATACTGGGTGAATCTCAAAAACTAAACCTCCCTTTCATTACAGTTTCAAAAGGGTTTATTAAAGCATTTTGCAgctcctttaaaaaataaaaatgaaaataaaatagtcaaGTTACACGTCCCCTACAGATACCACCCTTGAGATAAGGTGCATGATAACAGTGGCAGTGGAAGACTTATTCTCTGCTCAAAAGTCTTCATCCGATTCCTCCATGTAAATTCCCTTCCTCTCAGCTCAAGTAAGATGCATCGATTGCTCAGATGTTTTGCAGTGAACACCAATGGAAGAGACTGGAGTTCCCACCCCTACAATTATAGCAAGCAGCCGTCTGCGAGGCGTTTTCTTGTGCAATCATCAAATAATAGCAATATTCTCTTTAACATGAAGACTCTAAAACATCccacaaatgaacaaataaaagcagTGCAAGAAAAATGTCCAACTGCTGTAGCATTACAGCAATTCTATAAATAcccatatacatacatgtgtatattataaatattcttTCAAATTGTCAAAACATAAGgtgcttttcattgttttacagcAGGAGAACTTTCCATGCCCCCCAAAGACCCTCATATTTACCAAATCGACCACAGTGAGCTATAATATTCTACAGTGAAAAGCCTTCTCAAATCCAAGGAATATCATTCTTCAAAAATCATCCAACGAAAATCATTCATACCTCCAGCAATCTgagtcgtgtgtgtgtgcgcttcaGAAAGGCAATCAAACACTTCAGCTAGGACTGAACAAATACCAAAAGATTTCTGCACACGAGAtttggaataaaaaacagaaaacgcACATATCTGTAATACTACAAAAAAGGATAATTCTCTAATCTTTTGCAAAAGCACAAgatcacaacaaaacaaagtgccGTTGCACAATTTTTCCCAACTGACAAGCTACTCTGTActtgtctgtattttttttttttctctcacacaaGTAGGGGAAGAGTCCATTTCAAATACTAAACATGTTGACACCAACATGCTGACGGTCTCTCGCCGTGTGGAGGACTACTTGAAAATGGAAACGTCGACTATTACAAGACACTGGATGCTGATATTAATAGAACCGTCATCACTGTCGTTTCGTATTTGCATGGGACCGGAGTCGGGCCGGCGGTCTCTACGGCGAGAGGGGATGCAGGTGGCGTTGTGGCGGGGGAGTTATCGGTTGGCTTTGTACTTGGAGGCATCTCGAGGCTCACTGCTCGGGTTGCTCCAGTCGTCGGCCTCGGGGCTGGTCTGGTAATGCCGCCACGCCGACTTGTTGAACACAGGGAGGCGCTCAAAGGATTCGCTGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14713 True 3314 lncRNA 0.40 2 11848285 11851621
TU14714 False 3314 lncRNA 0.44 2 11848285 11851621

Neighbor

gene id symbol gene type direction distance location
AMCG00016197 pcyt1b,LOC107590340,LOC107721854 coding upstream 421 11837672 ~ 11847864 (+)
AMCG00016196 NA coding upstream 47489 11796688 ~ 11800796 (+)
AMCG00016198 NA coding upstream 56653 11782180 ~ 11791632 (+)
AMCG00016191 NA coding upstream 83638 11751518 ~ 11764647 (+)
AMCG00016192 rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300 coding upstream 98914 11741483 ~ 11749371 (+)
AMCG00016205 NA coding downstream 205079 12056700 ~ 12109384 (+)
AMCG00016206 NA coding downstream 321447 12173068 ~ 12205659 (+)
AMCG00016207 NA coding downstream 390022 12241643 ~ 12261142 (+)
AMCG00016215 NA coding downstream 534357 12385978 ~ 12397053 (+)
AMCG00016214 NA coding downstream 549208 12400829 ~ 12407292 (+)
G11905 NA non-coding upstream 29220 11817004 ~ 11819065 (+)
G11851 NA non-coding upstream 118059 11729600 ~ 11730226 (+)
G11850 sc6a7 non-coding upstream 120862 11726942 ~ 11727423 (+)
G11849 NA non-coding upstream 124684 11723197 ~ 11723601 (+)
G11848 NA non-coding upstream 125727 11722068 ~ 11722558 (+)
G11953 NA non-coding downstream 176678 12028299 ~ 12029121 (+)
G11988 NA non-coding downstream 354727 12206348 ~ 12207474 (+)
G12009 NA non-coding downstream 410430 12262051 ~ 12265709 (+)
G12032 NA non-coding downstream 471556 12323177 ~ 12328393 (+)
G12036 NA non-coding downstream 480515 12332136 ~ 12333112 (+)
AMCG00016174 NA other upstream 890253 10844127 ~ 10958032 (+)
G11660 NA other upstream 2249129 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2256636 9559464 ~ 9591649 (+)
G11545 NA other upstream 2622040 9223412 ~ 9226245 (+)
G11509 NA other upstream 2748249 9099420 ~ 9100036 (+)
G11921 NA other downstream 17204 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 141351 11992972 ~ 12005952 (+)
AMCG00016213 NA other downstream 583515 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 926603 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1419963 13271584 ~ 13389636 (+)

Expression


Co-expression Network