G11953


Basic Information

Item Value
gene id G11953
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12028299 ~ 12029121 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14758
atatatatatatatatatatatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaaccgaggtatgcagcaaagcatttgtgaagccacaacacgtacaaccttgaggcggatgggctacaacagcagaagaccccaccGGGTACCACTCCTCTCCActacaaataggaaaaagaggctacaatttgcacaagctcagggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacatagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatatatata
>TU14759
atatatatatatatatatatatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattctgagcgtggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaactgaaataaccactcgttacaaccgaggtatgcagcaaagcatttgtgaagccacaacacgtacaaccttgaggcggatgggctacaacagcagaagaccccaccGGGTACCACTCCTCTCCActacaaataggaaaaagaggctacaatttgcacaagctcagggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacatagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatatatata

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14758 False 526 lncRNA 0.42 2 12028299 12029121
TU14759 True 699 lncRNA 0.40 2 12028299 12029121

Neighbor

gene id symbol gene type direction distance location
AMCG00016197 pcyt1b,LOC107590340,LOC107721854 coding upstream 180435 11837672 ~ 11847864 (+)
AMCG00016196 NA coding upstream 227503 11796688 ~ 11800796 (+)
AMCG00016198 NA coding upstream 236667 11782180 ~ 11791632 (+)
AMCG00016191 NA coding upstream 263652 11751518 ~ 11764647 (+)
AMCG00016192 rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300 coding upstream 278928 11741483 ~ 11749371 (+)
AMCG00016205 NA coding downstream 27579 12056700 ~ 12109384 (+)
AMCG00016206 NA coding downstream 143947 12173068 ~ 12205659 (+)
AMCG00016207 NA coding downstream 212522 12241643 ~ 12261142 (+)
AMCG00016215 NA coding downstream 356857 12385978 ~ 12397053 (+)
AMCG00016214 NA coding downstream 371708 12400829 ~ 12407292 (+)
G11914 NA non-coding upstream 176678 11848285 ~ 11851621 (+)
G11905 NA non-coding upstream 209234 11817004 ~ 11819065 (+)
G11851 NA non-coding upstream 298073 11729600 ~ 11730226 (+)
G11850 sc6a7 non-coding upstream 300876 11726942 ~ 11727423 (+)
G11849 NA non-coding upstream 304698 11723197 ~ 11723601 (+)
G11988 NA non-coding downstream 177227 12206348 ~ 12207474 (+)
G12009 NA non-coding downstream 232930 12262051 ~ 12265709 (+)
G12032 NA non-coding downstream 294056 12323177 ~ 12328393 (+)
G12036 NA non-coding downstream 303015 12332136 ~ 12333112 (+)
G12042 NA non-coding downstream 325554 12354675 ~ 12355369 (+)
AMCG00016202 NA other upstream 22347 11992972 ~ 12005952 (+)
G11921 NA other upstream 156564 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 1070267 10844127 ~ 10958032 (+)
G11660 NA other upstream 2429143 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2436650 9559464 ~ 9591649 (+)
AMCG00016213 NA other downstream 406015 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 749103 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1242463 13271584 ~ 13389636 (+)
G12348 NA other downstream 1592758 13621879 ~ 13627711 (+)
G12349 NA other downstream 1602164 13631285 ~ 13631797 (+)

Expression


Co-expression Network