G11988


Basic Information

Item Value
gene id G11988
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12206348 ~ 12207474 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14808
gctTTATTAAAACTATGGCACTCTGTACATCAGCAGGAAGATATACAAGGTTTTCATTTTGCCATGGGATAGATGTCTACCCCCAATCAGGATTTCTCTTAACTGTGCACTTAAAGCAATGTTAAGTGTGATATCACCTAAATAAGcattacactgaaaaataatgtgatttaaaacaaaacaatacataacgACATACATGCAAGATGACAATAATACCCCACATTGTTGTTTGTGCATAATTGCAATTACTCCCATGAAACCCAAATGAcctaataaaaaatgacaaaagtaGTTTAAACTGAGCACCACTGGAATATTCTTTTGTCAGAAGGATTGCTTGAGAACTGACAAAAGTACCATAAACCCACCATGAAAACGGTAATAATAAGGGACACCATTTGGCAGAGTAATCTCTACTACTTATTGCAttatttctgaattaaattaaaaaaaaataaactttaagaTCTTGTCATTGAAAACCGCTCTTATGTAAAGCCTGGCAAGGTGACACTAAAACTGTATACAGCTAATCTCTTGGGTTATGCAACTGATAACATTCCtaatatcatttttattctagTCAGTCAACAAACCATGCCACGTTTTACAAGCCTGATCAGATTGTCAGCTGCTCTGATGCATTCATTTACACAGCAGAACACAATGCCAGTGATACTTGGCAAGAAAGCTTGGCAAAGCTAGCAGTCGACACTGGGCATTGGGGATGTACTATTAGTGTTGCACAGTTGTGCGCCTGCAAgtcaagttatttttttgtgtgcgcAGATCCAAACATGACTGAGAGCccaaaataattacatgacGATAATCtttttaaaccttaaaaaaaaaaaaaaaagacctaacAATGTGTCTTGAGCTGACGGATAACATTATAAGATAGACATCCTTTGACATTCAAAATTGcaatttatacaattaatacTCCATATATGAAGGAAAGATACAAGTGCTATACACAAGGCAAGTGCAAATTGACAAGCTTTTTTGGAGAAAGTGCCTGATCTCTTTGATGAGGATTTATGAATGAGAGCATGTCACATGAAGCCGACAGCAGGTAAATGACATACCttttgggggggaaaacaaaccaactacAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14808 True 1127 lncRNA 0.36 1 12206348 12207474

Neighbor

gene id symbol gene type direction distance location
AMCG00016206 NA coding upstream 689 12173068 ~ 12205659 (+)
AMCG00016205 NA coding upstream 96964 12056700 ~ 12109384 (+)
AMCG00016197 pcyt1b,LOC107590340,LOC107721854 coding upstream 358484 11837672 ~ 11847864 (+)
AMCG00016196 NA coding upstream 405552 11796688 ~ 11800796 (+)
AMCG00016198 NA coding upstream 414716 11782180 ~ 11791632 (+)
AMCG00016207 NA coding downstream 34169 12241643 ~ 12261142 (+)
AMCG00016215 NA coding downstream 178504 12385978 ~ 12397053 (+)
AMCG00016214 NA coding downstream 193355 12400829 ~ 12407292 (+)
AMCG00016218 NA coding downstream 458709 12666183 ~ 12679044 (+)
AMCG00016220 NA coding downstream 474798 12682272 ~ 12691799 (+)
G11953 NA non-coding upstream 177227 12028299 ~ 12029121 (+)
G11914 NA non-coding upstream 354727 11848285 ~ 11851621 (+)
G11905 NA non-coding upstream 387283 11817004 ~ 11819065 (+)
G11851 NA non-coding upstream 476122 11729600 ~ 11730226 (+)
G11850 sc6a7 non-coding upstream 478925 11726942 ~ 11727423 (+)
G12009 NA non-coding downstream 54577 12262051 ~ 12265709 (+)
G12032 NA non-coding downstream 115703 12323177 ~ 12328393 (+)
G12036 NA non-coding downstream 124662 12332136 ~ 12333112 (+)
G12042 NA non-coding downstream 147201 12354675 ~ 12355369 (+)
G12043 NA non-coding downstream 167274 12374748 ~ 12375109 (+)
AMCG00016202 NA other upstream 200396 11992972 ~ 12005952 (+)
G11921 NA other upstream 334613 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 1248316 10844127 ~ 10958032 (+)
G11660 NA other upstream 2607192 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2614699 9559464 ~ 9591649 (+)
AMCG00016213 NA other downstream 227662 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 570750 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1064110 13271584 ~ 13389636 (+)
G12348 NA other downstream 1414405 13621879 ~ 13627711 (+)
G12349 NA other downstream 1423811 13631285 ~ 13631797 (+)

Expression


Co-expression Network