G12009


Basic Information

Item Value
gene id G12009
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12262051 ~ 12265709 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14829
atttgttttaaaggttttattattGGGTATGGCAGTTTTAATAACCTTGAATCTTACAATATCCAAATATGtcaatataattattgtaaaaagtagattttacatttgtgtcatAGTTATGCATTGTTTACACCTGATAGACACTGTCTTAACCATTCTATATGGTATAACTAACACCGGTCTTTAGCTTTTGTCTGTGTAAATCATCCTGAAAGACTTAAATCCCGTCTGCAGAAGGCAATGACAAATGCGTGTGCAAACCAAACACAACTGTCAGAGGTGAGCGAGCACAACATAATGATTTTAAAGCATCTGGAGTTTCTGTCACTTTAAGAAATACTCTGTTTACAATGATCACACTCAAACAAAGCTGTCACTTCCCAAgacaaatgattaaaaaaaaaaaaaaagctcaacgGTATTGTCAAAGCACTtgttcagcacacacacaacacatatagCGGAATCTCAATCATCAGCCATACTAACAGTCTTTCAAATTCACAGTTTTTCGCCCCTTCAACACTTTGATTCTGTATGACACTTTGGATCTATTGTTCTTCTCctaatacacttaaaaaaaaatcttatttaaattgcaaactcttcaattatgtttttttgtgtagcACACATTTGCCACCACCAGATACACACTTTTCACTAAAAGTATTTAGACAAAGGGCAAGTGAAAGAGCCAGTTGCAATGTATTTAGTCCAGTAAATGGCCAAACTTATCCTTCATGACTGCAGATCCTTTTCATAGATGGCCAGAGGAATGTGCTGCAGGAGGATTCACAGCTGTGGTTTCTGACCGCTTTTCTGTCCTGCTTCATCCCAGACATGGTCtgtgggattgaggtcaggactctgggCCAGATATCAAATATACTCAACGCTATTCCCCCAAAGCACTGCAATGCAGTCATGGGCTTTGCTGACAGGCCGCAAACATCCATAGATCCGAACAGGCTACATGACACAAAATGTCCCCAAACTGCTCCATCTTTTGACTTCACAGCAGTCTGATTTCCGAGTCTTATCGATCCATCGCTCCTGTATCATTAGTGCCTTTAAAGTCCTCTATCCCATATGAAAATATACCATCACTGTCGCTGACACACAGCCATTCACGATTGAGAAgcttataattatattaaaaaaaagtaaaaagtaaatacaatgtgTTATAAAAAGGTTTGTCATCAATGCTGTAGGACTCAGTGGAAGGCAGAGAGAATGTCAATTGGTTAAACAGCACATACACCTTTTAATAATCACCAGGTGAACTTGTTGGAACAGATGACATTACAGGTAATACTTGATTTTGTGGTCGTAAGCGCAGATTAGCAAAAGTCACTGAAAGGCCAAAACTGAGTTAGTTCAGTGCTTCAGTGAgtcacaggtttttttttttttttttaaaccctgcagTCAAACCTTAGACAAAACAGAGACACCATATTTTCTTTCCAAGTCAAAATACTGGCACAATGACAGAGCCCAGATTTACAGTGTTCCGTTTTTCGAGACTTGAACTGAAACATATGTATGCACTGAAATGAGTATTTAGACAAAGGAGGTCAGACCTGCTGTTCCCCTTCCCTCTAAGTGAAAGACACAGGGGCACAGTATTGAGATCCTGCCAGTTCTTCGCCTGCTCCACCTCCGTTACATTCCAGCGTTAGATTTGATCATATATTCTGATATGTCATAGACTCGCACCTAGAGGAATCCTAGAGAGGCCCTTAGAACATCTCATTTATAAACGGCTCTTATATATAAAGTGACAGAAACCCCACGTTTTGTTTCAATTCTCTGCAAATGTGCAACCTGTAACTTACATCTACCAGGCCAACTCTAATTATGCTATACTACCAAATATATGAGGATGCCAAAATATTCTGGTTCTCAGTGTATTCAATAGGGAGTAGGCCCATCTTCACTGAGGTAGATAGAGGATTCCCAAGTTTACACAGCAGTCATTAATATCTCCAAATTACCGGCTCAAATAAACTGGTTAACAAGAACAGACAGATACAAGCACTAAAGTTTAAAAGCAATACCAGTGGTCCCACAGAAACcatcatttataatatttttttaccttaaGATTGATTATCCCAAAAAAAACCcactataaataatgtaaagaaataaaGTAACGGTCTGGATAAGGGTGAAACATAAATATCCAATCCCggtaatattttcattttaagcaaTTATTTTCTTGATCTTCAGTGGTTAGTGTtcatttcttctttctccttctttctcctTCCAACCAAAAACCAAACTGGGTTGTATGCAAATTGGGCAATGAGGGAAACAGCATGCCCAGATCCTTCTGCTGCATGGAACAAATGTGATGAGATCACGAACACATATCCCCTATtctgaatgaaaattaaaggTCAGTTACAGTAGGGTAGGTCATCAGTAAGTGTGATATTacctcacaaacacaaaacaatgaaacaagaaGGACCCTTCATTCGGAATCCATTATGAAGGTCTCAAAATCGGGGTTCAAATCTGAAACCAGGGCATCTACAAACTCTGCGGTGGAAGGAGTCTTCTGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14829 True 2586 lncRNA 0.38 3 12262051 12265709

Neighbor

gene id symbol gene type direction distance location
AMCG00016207 NA coding upstream 909 12241643 ~ 12261142 (+)
AMCG00016206 NA coding upstream 56392 12173068 ~ 12205659 (+)
AMCG00016205 NA coding upstream 152667 12056700 ~ 12109384 (+)
AMCG00016197 pcyt1b,LOC107590340,LOC107721854 coding upstream 414187 11837672 ~ 11847864 (+)
AMCG00016196 NA coding upstream 461255 11796688 ~ 11800796 (+)
AMCG00016215 NA coding downstream 120269 12385978 ~ 12397053 (+)
AMCG00016214 NA coding downstream 135120 12400829 ~ 12407292 (+)
AMCG00016218 NA coding downstream 400474 12666183 ~ 12679044 (+)
AMCG00016220 NA coding downstream 416563 12682272 ~ 12691799 (+)
AMCG00016229 NA coding downstream 619917 12885626 ~ 12890771 (+)
G11988 NA non-coding upstream 54577 12206348 ~ 12207474 (+)
G11953 NA non-coding upstream 232930 12028299 ~ 12029121 (+)
G11914 NA non-coding upstream 410430 11848285 ~ 11851621 (+)
G11905 NA non-coding upstream 442986 11817004 ~ 11819065 (+)
G11851 NA non-coding upstream 531825 11729600 ~ 11730226 (+)
G12032 NA non-coding downstream 57468 12323177 ~ 12328393 (+)
G12036 NA non-coding downstream 66427 12332136 ~ 12333112 (+)
G12042 NA non-coding downstream 88966 12354675 ~ 12355369 (+)
G12043 NA non-coding downstream 109039 12374748 ~ 12375109 (+)
G12183 NA non-coding downstream 637643 12903352 ~ 12903574 (+)
AMCG00016202 NA other upstream 256099 11992972 ~ 12005952 (+)
G11921 NA other upstream 390316 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 1304019 10844127 ~ 10958032 (+)
G11660 NA other upstream 2662895 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2670402 9559464 ~ 9591649 (+)
AMCG00016213 NA other downstream 169427 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 512515 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1005875 13271584 ~ 13389636 (+)
G12348 NA other downstream 1356170 13621879 ~ 13627711 (+)
G12349 NA other downstream 1365576 13631285 ~ 13631797 (+)

Expression


Co-expression Network