G12209 (serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278)


Basic Information

Item Value
gene id G12209
gene name serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12978278 ~ 12979516 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15068
tttttatttttcaatgttttattgaaaaaagaaaccaaaaacaatacCAAAACGAAATGCTAGTTCAGTCACTTGGTATTACATCATTCCAAAAGAAGTGTtgtgccaaaaacaaaaaccttatCATGACGTCCTAACATGGTATGGAAACACAGGAAGAAACTATTCAGTCAATCAGCTGCCACAGTTATTGCCTTGTACTCACATGTTGGCTAGTGCAGAAGAGTGGTCTTCAGTGCAGATGGAAGGTAAATTAatcagatcattttaaaatgtaacgaAGAGGGGAATGTATTTTGCTATAGAGTAAAAAACAGCATCAAATCACCAAGCAACCTCACAAAACATTGTCCAGAACAACACTTGTACCCATttactttaaacattaaagacattttaacacTTACAGGTTTCCGAATCACAACTCTGGAGGTGCTGGAGTGAATACTCTCTAAAAGGTAGCCCAACCTAAAAATACCAAGAAACCCTGAGAGGaatgttgtttttacatataaGGCAACAAACTGAAGACACCATACTTAATATAAGCATGGTATCCACCATTAACTGTGATTTTCATGGCGTGATTGTCTGAACTCTACCACAAATTGTCAAGGTGGAGGAAACAAATACCGTGGGTCCAAACCAGTAATATTGAAAATACTTCTGAACAAAAGTGAACTTTCTTGGAAGCAAGCAATTGTAAtatcaaacatttacaaagttAAAGATCTTCACAGGCTCGCTCTGAGGTAAGTTTACTCTTTTGAAATATCTTTATGGAGTGGGTGTAGCAGATATCAAATCCACAGTGTAAAGATTTCTATTGGAATGTGTCTGTAAGGTTGCATACGTGTCGCATTCTCTTTGTTTACATTGCCCTACCGTACTTCTAAGCCTCACACATCATCTAAACCCAAAAATACCCTGTAACAAGACTATAACTCATCCCTCATTTTGTCTCCTTTGGGTCTTACAAGCCTGCCAATGAAGAGGATTGAGTTGGTTTTATTGTCTTTCACAAGGAAGATGAACGGATGATCAGCATAGAACAGCTTGGGGTTCTTCAGCTTTTCACTACCGTAGATGCTGGCGTCAAATGGGTTGCCCTCTGTGTCCCACTCCATGGCAGATGCATGGAACACATTGGACAGGTCGGCTTTGGCCTTGTCCACAGCCTCAGTCAGGCCCAGCTCCCCAAGGGTT

Function

symbol description
serpinh1b Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within fin regeneration. Predicted to be located in extracellular space. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including ectoderm; fin; germ ring; mesenchyme derived from head mesoderm; and mesoderm. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 10 and preterm premature rupture of the membranes. Orthologous to human SERPINH1 (serpin family H member 1).

NR:

description
PREDICTED: serpin H1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15068 True 1206 lncRNA 0.48 2 12978278 12979516

Neighbor

gene id symbol gene type direction distance location
AMCG00016230 NA coding upstream 4731 12960048 ~ 12973547 (+)
AMCG00016229 NA coding upstream 87507 12885626 ~ 12890771 (+)
AMCG00016220 NA coding upstream 286479 12682272 ~ 12691799 (+)
AMCG00016218 NA coding upstream 299234 12666183 ~ 12679044 (+)
AMCG00016214 NA coding upstream 570986 12400829 ~ 12407292 (+)
AMCG00016237 NA coding downstream 41467 13020983 ~ 13021201 (+)
AMCG00016231 NA coding downstream 57666 13037182 ~ 13063508 (+)
AMCG00016240 NA coding downstream 205518 13185034 ~ 13188393 (+)
AMCG00016239 usp25,LOC107653727 coding downstream 232542 13212058 ~ 13247016 (+)
AMCG00016242 NA coding downstream 465522 13445038 ~ 13455916 (+)
G12183 NA non-coding upstream 74704 12903352 ~ 12903574 (+)
G12043 NA non-coding upstream 603169 12374748 ~ 12375109 (+)
G12042 NA non-coding upstream 622909 12354675 ~ 12355369 (+)
G12036 NA non-coding upstream 645166 12332136 ~ 12333112 (+)
G12032 NA non-coding upstream 649885 12323177 ~ 12328393 (+)
G12214 NA non-coding downstream 62726 13042242 ~ 13100583 (+)
G12217 NA non-coding downstream 85703 13065219 ~ 13065938 (+)
G12220 NA non-coding downstream 92055 13071571 ~ 13073752 (+)
G12289 NA non-coding downstream 493972 13473488 ~ 13473785 (+)
G12330 NA non-coding downstream 566883 13546399 ~ 13546598 (+)
AMCG00016221 NA other upstream 191379 12778224 ~ 12786899 (+)
AMCG00016213 NA other upstream 517013 12435136 ~ 12461265 (+)
AMCG00016202 NA other upstream 972326 11992972 ~ 12005952 (+)
G11921 NA other upstream 1106543 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 2020246 10844127 ~ 10958032 (+)
AMCG00016241 NA other downstream 292068 13271584 ~ 13389636 (+)
G12348 NA other downstream 642363 13621879 ~ 13627711 (+)
G12349 NA other downstream 651769 13631285 ~ 13631797 (+)
G12351 NA other downstream 655926 13635442 ~ 13637001 (+)
G12587 NA other downstream 1458255 14437771 ~ 14438606 (+)

Expression


Co-expression Network