G12214


Basic Information

Item Value
gene id G12214
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13042242 ~ 13100583 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15077
tatgttcctccactcatttatttaggtttttcctttaatttgtcacccgtctaaAGATACATaggtaaacattttaaataatgcaagacTACATCATGAAAGACTGGAAACGTAATAAGCTCAGAATGCAACCATtacattcagtttttattgtgaTGGTACAAAAGAATGTGTTGGAATGCAAATAGAATGCTTAACAATTCAGAAAATACAGGGCAGAGTATCATGGAAATCTGAATGCAATGTAAAGTGCTAATCATGTAAATAAGTTGATGCAATTGAGTAGGGTCCCGCTGCTTGGCTTCGTGCTTAGCTCTTCATAAGGATACATCATTCAGCAGAATTAGATAGGTTAGCTTATTTGATCAGctaactctaaccctaacctaCTCTGCTAGATTTTGTTAAAGCATAGGGATGACATCTAGTGCCTGTTCTGTCTTTCAACatgaacattatatatatgtttagacACTTTTTACAGTAAATCTGCTCATTAACCATTTTTTGTAGACCCCGCTGTGTTCTTAAAAAGGTGTTAAAGGGTACAGTggttcataaaaaaacattgagacAACATTGTCCGTCTGTGCATTGTCTGGATGTTTTGCAGATGGCAGGAGCAAGCTTGTGCAGTTGAGCAGTGGTTACTGTATCTGTCTTGCAGCCCTGGGTGGTGGAGAGCCACACAGATTTCCACGAAAATTACATAACTACAGTTAATCAAGAAGTCACCAGCTTATCATTCATAGACCCATTTCTAAAAAGTGATTCCCCATTCAGAATAGAAGACAGAGAGGTTAACTGGTTGGACTGCCCTCCCACAGGAGAGAGGCAGAGTTCAGGGGTGGTCTTCTCAGTTGCATAGGTCAGTACTGCAGCATGTCACTGTATCGTCTGGGATGCACATTTCATCGCATGTCCGAGTAGTGTTAGCCTGAGACCACCTTCTTGCAGAACTTGCTGGTGTCTGGACAAATAGTTGCAGCCATACAGTTAGGATCATCCCTACATGTGTTACACTTCAGTGCCACCACTTGTGGTACAGAACAGCACCACCAGAAGGGTACACAGGACAATCCTCATGATTAAAGTCTGGTGTGGAGGGCTGATGATACAAGAGCAGTCAAGAAGTGGAGAATGCTTTTCCTTTACTCTGTCACGGTCAGAAATACTGTTCTTGAGGACCTCGTCACAACCATAGGCAATATTACAGCCAATCAGATGCGACCGTGATCTTTCCTGATTGGTTAATTCAGGCCTCAGGTATTTGAGCATGACGAGGTATTCCAGCAACCAACACCGGCTACTCCTTCCCAGCAGAGTTGCTATAACCTGGGATACTTTTGCCACGTCTTCATGCTCATCATGCAACAGTTGTATCATACAAGTCTCTCATGTAAGATAGcacacagaaatgcatatatttaataagcAGAACGATAACATTTTGTACAGGTACAGCCATGCATTGGTTAAACTGCATTCATGACCcaggttatgttttttttttttttgccactcTC
>TU15078
tatgttcctccactcatttatttaggtttttcctttaatttgtcacccgtctaaAGATACATaggtaaacattttaaataatgcaagacTACATCATGAAAGACTGGAAACGTAATAAGCTCAGAATGCAACCATtacattcagtttttattgtgaTGGTACAAAAGAATGTGTTGGAATGCAAATAGAATGCTTAACAATTCAGAAAATACAGGGCAGAGTATCATGGAAATCTGAATGCAATGTAAAGTGCTAATCATGTAAATAAGTTGATGCAATTGAGTAGGGTCCCGCTGCTTGGCTTCGTGCTTAGCTCTTCATAAGGATACATCATTCAGCAGAATTAGATAGGTTAGCTTATTTGATCAGctaactctaaccctaacctaCTCTGCTAGATTTTGTTAAAGCATAGGGATGACATCTAGTGCCTGTTCTGTCTTTCAACatgaacattatatatatgtttagacACTTTTTACAGTAAATCTGCTCATTAACCATTTTTTGTAGACCCCGCTGTGTTCTTAAAAAGGTGTTAAAGGGTACAGTggttcataaaaaaacattgagacAACATTGTCCGTCTGTGCATTGTCTGGATGTTTTGCAGATGGCAGGAGCAAGCTTGTGCAGTTGAGCAGTGGTTACTGTATCTGTCTTGCAGCCCTGGGTGGTGGAGAGCCACACAGATTTCCACGAAAATTACATAACTACAGTTAATCAAGAAGTCACCAGCTTATCATTCATAGACCCATTTCTAAAAAGTGATTCCCCATTCAGAATAGAAGACAGAGAGGTTAACTGGTTGGACTGCCCTCCCACAGGAGAGAGGCAGAGTTCAGGGGTGGTCTTCTCAGTTGCATAGGTCAGTACTGCAGCATGTCACTGTATCGTCTGGGATGCACATTTCATCGCATGTCCGAGTAGTGTTAGTGCTGAGACCACCTTCTTGCAGAACTTGCTGGTGTCTGGACAAATAGTTGCAGCCATACAGTTAGGATCATCCCTACATGTGTTACACTTCAGTGCCACCACTTGTGGTACAGAACAGCACCACCAGAAGGGTACACAGGACAATCCTCATGATTAAAGTCTGGTGTGGAGGGCTGATGATACAAGAGCAGTCAAGAAGTGGAGAATGCTTTTCCTTTACTCTGTCACGGTCAGAAATACTGTTCTTGAGGACCTCGTCACAACCATAGGCAATATTACAGCCAATCAGATGCGACCGTGATCTTTCCTGATTGGTTAATTCAGGCCTCAGGTATTTGAGCATGACGAGGTATTCCAGCAACCAACACCGGCTACTCCTTCCCAGCAGAGTTGCTATAACCTGGGATACTTTTGCCACGTCTTCATGCTCATCATGCAACAGTTGTATCATACAAGTCTCTCATGTAAGATAGcacacagaaatgcatatatttaataagcAGAACGATAACATTTTGTACAGGTACAGCCATGCATTGGTTAAACTGCATTCATGACCcaggttatgttttttttttttttgccactcTC
>TU15082
ctttttttttttttttttttacgCTCAGAATGCAACCATtacattcagtttttattgtgaTGGTACAAAAGAATGTGTTGGAATGCAAATAGAATGCTTAACAATTCAGAAAATACAGGGCAGAGTATCATGGAAATCTGAATGCAATGTAAAGTGCTAATCATGTAAATAAGTTGATGCAATTGAGTAGGGTCCCGCTGCTTGGCTTCGTGCTTAGCTCTTCATAAGGATACATCATTCAGCAGAATTAGATAGGTTAGCTTATTTGATCAGctaactctaaccctaacctaCTCTGCTAGATTTTGTTAAAGCATAGGGATGACATCTAGTGCCTGTTCTGTCTTTCAACatgaacattatatatatgtttagacACTTTTTACAGTAAATCTGCTCATTAACCATTTTTTGTAGACCCCGCTGTGTTCTTAAAAAGGTGTTAAAGGGTACAGTggttcataaaaaaacattgagacAACATTGTCCGTCTGTGCATTGTCTGGATGTTTTGCAGATGGCAGGAGCAAGCTTGTGCAGTTGAGCAGTGGTTACTGTATCTGTCTTGCAGCCCTGGGTGGTGGAGAGCCACACAGATTTCCACGAAAATTACATAACTACAGTTAATCAAGAAGTCACCAGCTTATCATTCATAGACCCATTTCTAAAAAGTGATTCCCCATTCAGAATAGAAGACAGAGAGGTTAACTGGTTGGACTGCCCTCCCACAGGAGAGAGGCAGAGTTCAGGGGTGGTCTTCTCAGTTGCATAGGTCAGTACTGCAGCATGTCACTGTATCGTCTGGGATGCACATTTCATCGCATGTCCGAGTAGTGTTAGTGCCTAAGGAAAAGGACAAATAGAAACATGAGGATCTGGAAAGTGAAACCTAAGATGTTTAATATGTTAtgaatgtaatatgtaatacttaaatttaaaaataaagaaatcacaaAACATAATAAGGAACAAGAAACATCTGTTGTTGTGACCTATATATTCAAATTCTGATGTAGTGGATGCAATTTGGTAACACACTCCATTTTCTGTTCTCCATCCCATCATCCCAGCAAGATTATATCAATTCTATGGGGGTGTAAAATGATCAGAACTCCGCTAATGGCTCATTTAAGATCAACAGTATTCacgtatgtgtgtatttttaaatgtttgcccTCAAGGTATGGTTTCATATCAGAACACAACTGCAGAGGTTGAAAAACAAAGATCTTATCTAATTTCCTTTGAGAACGTCTCTTCTGGTAACTAGTTGCTGTCTGAAATATACCTCGTCAGCTGTTTTTAACTTTCAGTTGTATCAATCCCACTGCCTGCTTTGACCCCCTGCTTTTCATTTATACTGAAGGGTGTActgttgtgtattattataaaagaaGCTCAACATGGACTAATGTTCTCACAAGCCTCAAGCCTTTATTCTTTTAGGGAGTAAACAGCTTTAAGCTTTTAAGCTTTGCTTACCTGAGACCACCTTCTTGCAGAACTTGCTGGTGTCTGGACAAATAGTTGCAGCCATACAGTTAGGATCATCCCTACATGTGTTACACTTCAGTGCCACCACTGTGAATCAAGACATTGAGTCAGTCCTTTTTGGGGTTATGTACAGGCTGTTTATATTACATTGACAAAATCTCCCCTTTTCAGCAATCAGAAACTCCCTCACCAACAATTAGTAGATAagttcataaaatgtataaataaataaatacaatccttTAATCCATTATTctttcttcaaatgcattttgtaaagtCCTGTTTGTAGTATTGTTTCTATTGCACTCTTTCAGTGAAAAAGCCgggtaaaacaaaactaaatgctAAATCGAATAATTAATTGCAAATTTAACCTGGCACTTTATAtttagatacacacacactcaaactcaGAAGTAATACAGCACATTAGTGTTAAGTTTATTCCATTGTTTTGGTACCTTCCTTTCTATATTAAATGCTCTTAAGATAAGATGACGTATTTTCACTCACCTTGTGTGGTACAGAACAGCACCACCAGAAGGGTACACAGGACAATCCTCATGATTAAAGTCTGGTGTGGAGGGCTGATGATACAAGAGCAGTCAAGAAGTGGAGAATGCTTTTCCTTTACTCTGTCACGGTCAGAAATACTGTTCTTGAGGACCTCGTCACAACCATAGGCAATATTACAGCCAATCAGATGCGACCGTGATCTTTCCTGATTGGTTAATTCAGGCCTCAGGTATTTGAGCATGACGAGGTATTCCAGCAACCAACACCGGCTACTCCTTCCCAGCAGAGTTGCTATAACCTGGGATACTTTTGCCACGTCTTCATGCTCATCATGCAACAGTTGTATCATACAAGTCTCTCATGTAAGATAGcacacagaaatgcatatatttaataagcAGAACGATAACATTTTGTACAGGTACAGCCATGCATTGGTTAAACTGCATTCATGACCcaggttatgttttttttttttttgccactcTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15077 False 1526 lncRNA 0.47 3 13097986 13100583
TU15078 False 1527 lncRNA 0.40 3 13097986 13100583
TU15082 True 2502 lncRNA 0.38 2 13042242 13100583

Neighbor

gene id symbol gene type direction distance location
AMCG00016237 NA coding upstream 21041 13020983 ~ 13021201 (+)
AMCG00016230 NA coding upstream 68695 12960048 ~ 12973547 (+)
AMCG00016229 NA coding upstream 151471 12885626 ~ 12890771 (+)
AMCG00016220 NA coding upstream 350443 12682272 ~ 12691799 (+)
AMCG00016218 NA coding upstream 363198 12666183 ~ 12679044 (+)
AMCG00016240 NA coding downstream 84451 13185034 ~ 13188393 (+)
AMCG00016239 usp25,LOC107653727 coding downstream 111475 13212058 ~ 13247016 (+)
AMCG00016242 NA coding downstream 344455 13445038 ~ 13455916 (+)
AMCG00016249 atg101,LOC107751375,LOC107686213,LOC107589731 coding downstream 482461 13583044 ~ 13588973 (+)
AMCG00016250 NA coding downstream 497251 13597834 ~ 13617644 (+)
G12209 serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278 non-coding upstream 62726 12978278 ~ 12979516 (+)
G12183 NA non-coding upstream 138668 12903352 ~ 12903574 (+)
G12043 NA non-coding upstream 667133 12374748 ~ 12375109 (+)
G12042 NA non-coding upstream 686873 12354675 ~ 12355369 (+)
G12036 NA non-coding upstream 709130 12332136 ~ 12333112 (+)
G12289 NA non-coding downstream 372905 13473488 ~ 13473785 (+)
G12330 NA non-coding downstream 445816 13546399 ~ 13546598 (+)
G12331 NA non-coding downstream 451011 13551594 ~ 13551858 (+)
G12347 NA non-coding downstream 537719 13638302 ~ 13639588 (+)
G12368 NA non-coding downstream 556810 13657393 ~ 13659659 (+)
AMCG00016221 NA other upstream 255343 12778224 ~ 12786899 (+)
AMCG00016213 NA other upstream 580977 12435136 ~ 12461265 (+)
AMCG00016202 NA other upstream 1036290 11992972 ~ 12005952 (+)
G11921 NA other upstream 1170507 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 2084210 10844127 ~ 10958032 (+)
AMCG00016241 NA other downstream 171001 13271584 ~ 13389636 (+)
G12348 NA other downstream 521296 13621879 ~ 13627711 (+)
G12349 NA other downstream 530702 13631285 ~ 13631797 (+)
G12351 NA other downstream 534859 13635442 ~ 13637001 (+)
G12587 NA other downstream 1337188 14437771 ~ 14438606 (+)

Expression


Co-expression Network