Gene
RNA
| Item | Value |
|---|---|
| gene id | G12289 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 13473488 ~ 13473785 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007017 | microtubule-based process | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0044422 | obsolete organelle part | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0032991 | protein-containing complex | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU15170 | True | 298 | lncRNA | 0.54 | 1 | 13473488 | 13473785 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016242 | NA | coding | upstream | 17572 | 13445038 ~ 13455916 (+) |
| AMCG00016239 | usp25,LOC107653727 | coding | upstream | 226472 | 13212058 ~ 13247016 (+) |
| AMCG00016240 | NA | coding | upstream | 285095 | 13185034 ~ 13188393 (+) |
| AMCG00016231 | NA | coding | upstream | 409980 | 13037182 ~ 13063508 (+) |
| AMCG00016237 | NA | coding | upstream | 452287 | 13020983 ~ 13021201 (+) |
| AMCG00016249 | atg101,LOC107751375,LOC107686213,LOC107589731 | coding | downstream | 109259 | 13583044 ~ 13588973 (+) |
| AMCG00016250 | NA | coding | downstream | 124049 | 13597834 ~ 13617644 (+) |
| AMCG00016256 | NA | coding | downstream | 203209 | 13676994 ~ 13705883 (+) |
| AMCG00016255 | uvrag,LOC107577365,LOC107589407,LOC107686127,LOC107691651 | coding | downstream | 233429 | 13707214 ~ 13714691 (+) |
| AMCG00016254 | uvrag,LOC106603537,LOC106567946 | coding | downstream | 252586 | 13726371 ~ 13742178 (+) |
| G12214 | NA | non-coding | upstream | 372905 | 13042242 ~ 13100583 (+) |
| G12220 | NA | non-coding | upstream | 399736 | 13071571 ~ 13073752 (+) |
| G12217 | NA | non-coding | upstream | 407550 | 13065219 ~ 13065938 (+) |
| G12209 | serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278 | non-coding | upstream | 493972 | 12978278 ~ 12979516 (+) |
| G12183 | NA | non-coding | upstream | 569914 | 12903352 ~ 12903574 (+) |
| G12330 | NA | non-coding | downstream | 72614 | 13546399 ~ 13546598 (+) |
| G12331 | NA | non-coding | downstream | 77809 | 13551594 ~ 13551858 (+) |
| G12347 | NA | non-coding | downstream | 164517 | 13638302 ~ 13639588 (+) |
| G12368 | NA | non-coding | downstream | 183608 | 13657393 ~ 13659659 (+) |
| G12406 | NA | non-coding | downstream | 355949 | 13829734 ~ 13830887 (+) |
| AMCG00016241 | NA | other | upstream | 83852 | 13271584 ~ 13389636 (+) |
| AMCG00016221 | NA | other | upstream | 686589 | 12778224 ~ 12786899 (+) |
| AMCG00016213 | NA | other | upstream | 1012223 | 12435136 ~ 12461265 (+) |
| AMCG00016202 | NA | other | upstream | 1467536 | 11992972 ~ 12005952 (+) |
| G11921 | NA | other | upstream | 1601753 | 11868825 ~ 11871735 (+) |
| G12348 | NA | other | downstream | 148094 | 13621879 ~ 13627711 (+) |
| G12349 | NA | other | downstream | 157500 | 13631285 ~ 13631797 (+) |
| G12351 | NA | other | downstream | 161657 | 13635442 ~ 13637001 (+) |
| G12587 | NA | other | downstream | 963986 | 14437771 ~ 14438606 (+) |
| AMCG00016288 | NA | other | downstream | 1271531 | 14745316 ~ 14783535 (+) |
