G12373


Basic Information

Item Value
gene id G12373
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13657443 ~ 13659659 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15263
NNNggcaaacgtacaaaatcaacaggggatcaaatacttttttccctcactgtaggtttATTGCTATCCTTACCCCCCAAACAACACGCGCCTTTATGTGGTACACACACATCTCAGTGCACCCTTTGAGGCATCAGCCtgatatttaagaaacaaaccaacacgTATGTCTTTGTTAGTGTTTAAGGTGTCGTCCAGCGTGCTGTAATGTGATGAAATGTTAGTCAGACTGCGTGAACATTGTCACCCTGCTTTCCAACACTGTAACTGAGCTTCTGTCAAGTGCCCAAACACCTGCCCTATTCCCGCCAATCCCCATCCTCTCTTTGCCTGCCTCCTTCCCCGTCCATCAGAATGTGCAACACCACTTTCCCCAATCCAGAGGCACCTGCGCTGCTTCGCCCGAAAAGTCATTTGTAGTTGCCTCTGTTTTCTGGACTTGGATTTATTGAATTGTAGGAAAGGTCACTCAAAGATTAGACTTAATGGAGGGTATCTGGTTCTGATAATTTGGTTGCTAAGAAACCAAGTGAGTTACAGTAATAAGATAACCTGTTACTGCATGTGAGGGTATTGCAGTGTAGTTTAGAgcttgcttttaaatgcatttcctgtcctataataataataataataatatgcccACTAAAGTAAATAAGTTGCTCACTTGATACCTAAACACTAtaatattactttaatattatCTCTCACACAAAGCTTTTCAATTGTACATTCAAAATCGACATCTCTAAAGCCTAAAACACGCAAAGAATGGTAGCATAAGTTAATTTCTTCAGAATCTGGATGGGTAATGATTCATGCATTAAGcaacaacaaaaggaaaatccCACAGACAACAGGCCTAAACAATAAACAGACAGTAAAATGATAATTTGAAGATGACGAAATATGCTGTTGAATTGAAAAGAAAGCCAAACGTATTGTTTTCTAGCAGGATCTGACAAGTTAACACATTCACACTGATTGTGAAGAGGATGTCAAAGTAGGAGTGACAATCGAGTAACAGAAATGCAAGGAGTATGAGAAAGCATCAGGAAGGTGGGAGTGCTCTGCGATGAACTCAGCCAGCTGAGTGCGTCTTCTCTTGGTAGCAGCATATGAAGAGTTATACCCTGAGGCCTTGGGAGCCCATCTGGGGCTCAGTAGACATCATCTGCCAAGCCTCATAGATCTGACAGCAGCAGCATGCTACAGGAGGCTGGCGGACAACTTGTCAAATAAACGGCATAACAAGCATAACATATACAGTGTATTAGAGAGGTCTAGAGGGCTTGGTGTCTAGGATCAAAAGCTTGGGGTTAAGCATttcatcttttttgtttttaaatttctttctttctttttattttgcagatattgtttataattcttctttattttgctgtattcaAATAGCCCTGTGGCCTAGTGGTAAagttgtatttactgtatttaatgctgtatttgtgtattgttttttttcagactgATATATTGTTGCTCTCAGGCCACGGGCTCCAGACTCCTTTCTTGGTGAAGGCAATTACTGTTAGGCACATGACATTTGAAAGTGATACTTTACAAATGCTTTGCAAATGCACCAACAAACGCTACACATACACCAAAACGAAGGTGTGTTTTGGATGACCACACCTTCTCTTGTTAATGAATAGCCAGATTTATATAAGATTGTGCCTCCCTGTTCATATGTGCAGATCTTATTCTTAACAATAGATGTCTGCTGTAGCTGACCACAGTTTCTTAGCATCAGAGGGGGGCTGAACCAGAACTGCGCTTCTGTACACAGTCTGAATTCACTCCACCATCAGAGGCCAGTATGACTGGGTAGATTACCCAACCAATGTATTCTGTGGGATTTGCATGGCATTTCATGACCTCCATTTTTCAGCACCAAACCTTTTGTTATAGTTGAACCCACCTGCTTGGGAGTGGCAGCTTATCTTCTTGTCTGTTTATCTGAGTCCTCACAGTCAAACCAGCCTCGAGCGACTGTGTCTCCAGGGGGTGAGAGCCGCCTAATTAATATTTTGCAGCTGTGGGCTTGTTGCGTATCACGGATTGTCCATGTAATGTGCTGAGCACACCACACTTGGTGCTATCTCCCATTCATGCTGTTAGTAtgagaattatttaaaaagaagacagaaaaaagtaatgtaCTGCAAATATTTGATTGTGACGTGCTTGTGTTCTCTG

Function

NR:

description
PREDICTED: L-amino-acid oxidase-like

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15263 True 2217 lncRNA 0.47 1 13657443 13659659

Neighbor

gene id symbol gene type direction distance location
AMCG00016251 NA coding downstream 62292 13584907 ~ 13595151 (-)
AMCG00016245 NA coding downstream 74777 13562171 ~ 13582666 (-)
AMCG00016247 zgc:112083,LOC108278169,LOC107726099,LOC107662779 coding downstream 114808 13535694 ~ 13542635 (-)
AMCG00016244 NA coding downstream 122468 13522174 ~ 13534975 (-)
AMCG00016248 NA coding downstream 162869 13484337 ~ 13494574 (-)
AMCG00016257 wnt11 coding upstream 170101 13829760 ~ 13840039 (-)
AMCG00016258 NA coding upstream 199674 13859333 ~ 13874048 (-)
AMCG00016259 NA coding upstream 215076 13874735 ~ 13879998 (-)
AMCG00016262 NA coding upstream 253263 13912922 ~ 13921956 (-)
AMCG00016263 NA coding upstream 276964 13936623 ~ 13936850 (-)
G12358 NA non-coding downstream 17853 13638303 ~ 13639590 (-)
G12359 NA non-coding downstream 18293 13627255 ~ 13639150 (-)
G12235 NA non-coding downstream 557219 13097991 ~ 13100224 (-)
G12096 NA non-coding downstream 1018745 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 1266035 12387798 ~ 12391408 (-)
G12585 NA non-coding upstream 767966 14427625 ~ 14428817 (-)
G12594 NA non-coding upstream 771953 14431612 ~ 14436531 (-)
G12595 NA non-coding upstream 803958 14463617 ~ 14463823 (-)
G12702 NA non-coding upstream 1533543 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 1757364 15417023 ~ 15417518 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 98259 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 786883 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 1328410 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 1710121 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1875896 11766152 ~ 11781547 (-)
AMCG00016281 NA other upstream 760697 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1125539 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 2810952 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 3198882 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 3206659 16866318 ~ 16870002 (-)

Expression


Co-expression Network