G12487


Basic Information

Item Value
gene id G12487
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14182605 ~ 14184686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15406
GCAAGAATAgatatataatttgatttaatatagattagacTTCATTTGCATAAAAAGGAAACTGACTCAGCATTGAAAGTGAAGCAATaaagtggtggtggggggtgtgcgtgtgtgcgtggtTGTGTGTATCAGGACAAAAGGGATGAGAGGGTTGACTCAAGTTCGAGGTTTCGGTAGCAgttgagagagggagactgtTTTACggtccaaaacaaaacatccctgTCAGAGTATCACTGTGCTGAATGCATAAGCAAAAAAGACGCGTTTACAGAGCGGTTTTGACAAGCAAATCAAACAGGCTTTGAAGGGTATCGGAACCATATTACGGTTTGCCCGCAGGACAAAGCTTCacaaaaacttgtttttcttgagCACTAGCACAACAGGAATGCCGTACCGAGCGTGTGCTTCACACTAGCGGCTACAGAGGAGAGCAGCATGCCAtcttaataatattacattaatttgggGGCTTTTCTTAAACATCAGAATCATGTTACATGATTCCAAAAGACAATGTCAGAGATCGGGCTGTCGAATAGAGAAGTCAAACCGCAAAATAACCACTGCAATGTCAGGCAGGAAGCAATCACCTGAAGTCTGACTGTTTGACTAGAAACACACCCCgaactgaaataaaactgaaaaaaatgaaacctttgacttaattgtttaaaataatattgttccACGTGCATATCCATGGAAACGATAATCTCACAGCACACTGTCACTCTGCAGACAGCTCTGAGACACGATCAAGTGCTTAATGCGGTGAAGAGAGAAAAGACAGCCCCCGAGGCCGAGACAGGCTGGCTGTGTCCAGCGGGGGGTGATGCGGTCTGTCGGCCTTTGAGTAGTTACTCTCTCATATCTTGGTCGATGCCCTCTtcaggacacacagacagtacaGGACACTCTCTAGCTAAGCTGgcttccctttttatttttctctttcaaatgtatggatttaattcatttttttgctgttgttggggGGAGGTTATGTGGTTGGGTTTGCATAATGGAAGTGGGAAACATTCATTGTGATCAAACGCAAGGAAAGCCAAGCCTGTGCTCCCCCCTAGGCTGACCAGCTCACTCGCCTCTCCCTCCACTTCCTCTTTCTGATCAGACAAGAGGTTCTGTATCTTAATACGATCCATGAAAGCGGTGTGTTGTTTCATCAGGGCCTTTGACCTCAGCCAGCCCAGcagttgtgtgtttattctatATTTCTGGTCCAAATTCAAACCTGATTCTTTTTGAGTCTTTAGAAGTGTCCAAAATCCTTCCAAAAAGAGCAATGGGATAAAAATGACTTACACTGCAGTGTGTCATGTCCCCTTGTGTTCCCACGTGGCTCGGGCTGCCTGTGAATCACACCTCCAGAGTGAAGAGCCTCTGATAGATAAATAGAAAAGCAGGATCAAAATCACTTGTGAAGTAAAAGTTGTGGGTTTCCCAACTCATTGCTCTTGTAAAGTGGTTTGCAGtgcatacaaaaacaataaaaagctgGTCTATTTCCCAGATTCTATTGTGTCGTCCAGCTTTTCAATAAGCTCCCCTCCTCGGCAGTGGGCTTTATTGGGTGCCCGTGGGCGGAGGGGCGCACTCTCCCATCAGAGCACTGGCTGCTCCGGCCCTGAACTGCAGCAGGAAGGAGGATGCTGGGAGAGGtttagagaaaacaaaacagtggaGAAGACACCCAGAGCAAaggttaaaacaacaaaataaaaagaaatacaaatgacaatttatttttaagacaagACAAATTACATCAAGTTTAATTGTGCTGCACTTTAAAAAGGTAACGTTGGTACATCCCATTCTGCTGCATGTACCCCGGTCTGCCACCGGACTGAGAtcacctgtttttctctctagGCTGTGGGACACTGTGGGGTGCAGGTTTGTCTGTCTCTCGATGACCCTCCAACAGTTGTTGTCAATGTGTCTGTGCACGGGCAATGGAATGAAAGCATGCTTTGTACGAAAGCACAATAAttgtatagaaaacaaaaatgattacagtgccaattttttaaataaattgatatgTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15406 True 2082 lncRNA 0.53 1 14182605 14184686

Neighbor

gene id symbol gene type direction distance location
AMCG00016270 NA coding upstream 5475 14176792 ~ 14177130 (+)
AMCG00016269 kcnj6 coding upstream 20177 14161493 ~ 14162428 (+)
AMCG00016265 erg,LOC106567682 coding upstream 98112 14069281 ~ 14084493 (+)
AMCG00016264 NA coding upstream 202160 13976780 ~ 13980445 (+)
AMCG00016261 NA coding upstream 228313 13949907 ~ 13954292 (+)
AMCG00016273 dscr3 coding downstream 39202 14223888 ~ 14233628 (+)
AMCG00016272 NA coding downstream 73923 14258609 ~ 14264073 (+)
AMCG00016271 NA coding downstream 85631 14270317 ~ 14282590 (+)
AMCG00016279 hlcs coding downstream 111676 14296362 ~ 14298779 (+)
AMCG00016278 NA coding downstream 164286 14348972 ~ 14383679 (+)
G12406 NA non-coding upstream 351718 13829734 ~ 13830887 (+)
G12368 NA non-coding upstream 522946 13657393 ~ 13659659 (+)
G12347 NA non-coding upstream 543017 13638302 ~ 13639588 (+)
G12331 NA non-coding upstream 630747 13551594 ~ 13551858 (+)
G12330 NA non-coding upstream 636007 13546399 ~ 13546598 (+)
G12489 dyrk1a,LOC107744208 non-coding downstream 10249 14194935 ~ 14196634 (+)
G12549 NA non-coding downstream 199219 14383905 ~ 14384657 (+)
G12566 NA non-coding downstream 212563 14397249 ~ 14398414 (+)
G12589 NA non-coding downstream 264126 14448812 ~ 14449212 (+)
G12591 NA non-coding downstream 266824 14451510 ~ 14451754 (+)
G12351 NA other upstream 545604 13635442 ~ 13637001 (+)
G12349 NA other upstream 550808 13631285 ~ 13631797 (+)
G12348 NA other upstream 554894 13621879 ~ 13627711 (+)
AMCG00016241 NA other upstream 792969 13271584 ~ 13389636 (+)
AMCG00016221 NA other upstream 1395706 12778224 ~ 12786899 (+)
G12587 NA other downstream 253085 14437771 ~ 14438606 (+)
AMCG00016288 NA other downstream 560630 14745316 ~ 14783535 (+)
AMCG00016329 NA other downstream 2299669 16484355 ~ 16486003 (+)
G13012 NA other downstream 2932107 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 3377732 17562418 ~ 17599581 (+)

Expression


Co-expression Network