G12566


Basic Information

Item Value
gene id G12566
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14397249 ~ 14398414 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15511
ATGTGCTGCAGGTGTTTGTAGGACGTGTGGCGTTAATTGCAGAGTCCGTCAGCAGGCTCTGCGACGCGCGCCTCCTCAGCCAGCGTGTCTCTGTCACACCCGGAACTAAAGCCGCGCTGAGCCGGACGCCACCCGGGCACATTTGATGTGTGCATCCGCGAAAGCTGTCGGAAAATCAGTTTTATACGTAAATTGTTATATGAAAAACTCAAGagaCTCTCTGTTGACAAGATTAGCAGCTATGATGTCACACACATTCAAAAGCAGTAAGCAAAATTTCTCATTTGGACCATGGAAACTCAcagcagagaaaacacacaTCATGAAATCTAAAGACATCGAACGGTAAGAATCAAtttcttatttagttttaatatgatAATTGGATAGCAAGTAAATTATATTCTTATATACTGCTATATAACAGCTCCATAAACAtgggaagttttttttatttacactggACCAATtgcattatatacagtga

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU15511 True 487 lncRNA 0.41 2 14397249 14398414

Neighbor

gene id symbol gene type direction distance location
AMCG00016278 NA coding upstream 13570 14348972 ~ 14383679 (+)
AMCG00016279 hlcs coding upstream 98470 14296362 ~ 14298779 (+)
AMCG00016271 NA coding upstream 114659 14270317 ~ 14282590 (+)
AMCG00016272 NA coding upstream 133176 14258609 ~ 14264073 (+)
AMCG00016273 dscr3 coding upstream 163621 14223888 ~ 14233628 (+)
AMCG00016285 cblb,LOC107576804,LOC107699267 coding downstream 103720 14502134 ~ 14503691 (+)
AMCG00016286 cbl,LOC102193754 coding downstream 142027 14540441 ~ 14575549 (+)
AMCG00016292 NA coding downstream 419461 14817875 ~ 14827375 (+)
AMCG00016290 NA coding downstream 432313 14830727 ~ 14843857 (+)
AMCG00016291 NA coding downstream 446422 14844836 ~ 14845843 (+)
G12549 NA non-coding upstream 12592 14383905 ~ 14384657 (+)
G12489 dyrk1a,LOC107744208 non-coding upstream 200615 14194935 ~ 14196634 (+)
G12487 NA non-coding upstream 212563 14182605 ~ 14184686 (+)
G12406 NA non-coding upstream 566362 13829734 ~ 13830887 (+)
G12368 NA non-coding upstream 737590 13657393 ~ 13659659 (+)
G12589 NA non-coding downstream 50398 14448812 ~ 14449212 (+)
G12591 NA non-coding downstream 53096 14451510 ~ 14451754 (+)
G12605 NA non-coding downstream 178173 14576587 ~ 14615709 (+)
G12712 NA non-coding downstream 1065663 15464077 ~ 15464312 (+)
G12763 NA non-coding downstream 1342772 15741186 ~ 15743647 (+)
G12351 NA other upstream 760248 13635442 ~ 13637001 (+)
G12349 NA other upstream 765452 13631285 ~ 13631797 (+)
G12348 NA other upstream 769538 13621879 ~ 13627711 (+)
AMCG00016241 NA other upstream 1007613 13271584 ~ 13389636 (+)
AMCG00016221 NA other upstream 1610350 12778224 ~ 12786899 (+)
G12587 NA other downstream 39357 14437771 ~ 14438606 (+)
AMCG00016288 NA other downstream 346902 14745316 ~ 14783535 (+)
AMCG00016329 NA other downstream 2085941 16484355 ~ 16486003 (+)
G13012 NA other downstream 2718379 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 3164004 17562418 ~ 17599581 (+)

Expression


Co-expression Network