G12605


Basic Information

Item Value
gene id G12605
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14576587 ~ 14615709 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15565
gtaaaaacacacCCAGCACTACGTTTTCTGGagtttattcttttttcttcaaaatgtacactttttattttaaacaaaagtacaaaaacaaaaatcagtatTTACAGTACCAGTATGGCCTTCTAAttgttttcccccctctttGGTTTCACTGCTGACCTGAAcggatgttttaaaatgaacagaaaatgcagaacaattaaaaacagcttgtcaacaatgttaaagaaaaacTCCAGTAGCACATCTGCAAGATCTTCTCCagaggacttttttttttttttttttggtttttttttttt
>TU15566
gtaaaaacacacCCAGCACTACGTTTTCTGGagtttattcttttttcttcaaaatgtacactttttattttaaacaaaagtacaaaaacaaaaatcagtatTTACAGTACCAGTATGGCCTTCTAAttgttttcccccctctttGGTTTCACTGCTGACCTGAAcggatgttttaaaatgaacagaaaatgcagaacaattaaaaacagcttgtcaacaatgttaaagaaaaacTCCAGTAGCACATCTGCAAGATCTTCTCCagaggacttttttttttttttttttggtttactttTTATAGAAAAACTCACTGAAGGGGAAAAAGGGTTTAAACTTTATACATAACTTAGTACTGCTTTGCCTGTCAGTTCTGAGTGAAGGCTAAAACCTTCgagtgtacagtacagcacagtaccaTCCAGAGACCTACATGATATCTGTTCACAATGTCTTATACCTACCTAATGAATGCTGAAGCACTGCTAGACTCGTGTCCCTTACAGTATAAATAGTGCCGAAAACAAGCTAACCATCCCGAtccaaaatatttacagtggACCGTAAACTAATGTGAACACAGTGTGTATAATCACAGCCCGAATTGCGCCACTCGAACCCGACGTAGTGAGGGGCGCGACACCTGGCAGTTTACATGCGTAGTGCGTGACAAGAAAAACCTTGATAGGAAACAAAAGTGTGCGCGTGGAGAGACCTCAGCGctctagtgtagtgctacagtCGCGATGCAAACCGCGTCCAATGATTAGAGACAACATGATGACCAGGGGCTGGGGGGGCGGAGGTAAGGGGCAGCAGCTACTGACCAGAGAGTCCTTTTACAGACGTTCAAAACCACTCCGCAGCCGGGTCTCTAACACTGCTAGTCCAGCCACACAACAAGCAGTTgccttacattaaaataaatacaaaaatgttccAAACAGGGGCCTGAACTCTCAGGTTAATTTTTATTCTCTTCAGATGGAACTGTTCTAGCATCTGTGCTTTTTATGGATGCTAGttaggagagagagggaaaaaaccCATTTCAGTcaagaaatatgaaaagaatCCCACaccaaatgtatgtttatatcagaggaggaggggagcgTTAAAACTCGGCGAAGTTTAAAACCGTTATGTGAAGACAAGAACGCATGCGGTCCGACACGAACAAAAGTGTAACAGCAGTGAAGTCTTCAGTCTCCGTCAAATGTACGAAACCGGTCGGCCCGAAGAACGATAATGGCCACAGCtaaccggggggggggggggggggggggggggggggggggggggggggggggtgatctGGCAGCGGTCGGATACGATTCTGCTCGCCCGTGAAATTCACATACTTATATGGATGTCAATAGTGTACCgagaatttacatttttactaaagcagaaaaaaatataaacaaaaggaGCTGAACAAAACAGGAAACCCACTGAACCAACAAATAGTGTATCAAACAAAGGCATTCACCAGGAACACAAggagggaaaaacaacaaaagtttcAGTGCAGACTCAGGGgagaggggcgggggggcaaaaaaaaaatccatatacaacacaaatatttccattgagcttttctttaaatgttggCGGTAGTTACGCTAATTCTGTACAGTTCTGGCTTGTCTTTAAAATGGTTTCCACTGAACGTGCTGTGCGTTAAAAGCTTGAAGGATGGCGTCCAATCAAATGGCTTTCCAgatagtttgtgtgtttgtgtcattcGTTTGCTTTTTCTCTAGACAGCAAGTCCAATGTGAAAGGCATCTCGTTACGGCTTCTTCCCTCATCTCTCCACTGCCACCGTGGTCTCTACACTTCTGCCTTGTGGTTGTTCTCCTCCAGCTTTTTGCTCTCCTCTGAAGTTCCAGCTTCCTTCTCTCCGGTTTTCCAGGTTCCTtgtctgaaagagagagagagagagagagagagagagagagagagggagctggCAGGCGGTGCCGGTGCCGGTGACCCGGGTGTTGAAGTGCAGGCGTACTTACAAGATGACACGCTGATGGAGCGCTCGTGCTCGCCCAGCTTGTTGCTGGCTGTGCAGGTGACAGTGACATTTCCCGGGGGAACCACAGTGATGGTGTGGGTGAACTTTCCGTTGATGTAGGGGCTCTCCTTCTCCTGTGGAGCAGCAAATACACACAGTCACGTGATCAGCACACCGTCATTCGTATCGCAATGAAACACACCACTGTACTTGGTCCGTTTAATGATATTTCATGCTCCTCTGCCCAGCCCTGTAGTAACTGCAGTTTGCAGTCATAATTCTTTTCTGCCACCAGAGGGCAGTCAGAGGCCTCAGCCATTGTTCTAACTGTAGAGCCAGCTAGTTCCAACTGTTGGCCACACCCAGGACTGTAACTAACAAGCCCGGAGGCGCGTCAATACCCAGCTCACAGAAACAGCCAGGCTGGTCACAATTAGTTTTGCCACAGCAGAACAGGTAGAGCCGTTCTTAAAATCTATTTCAACATTGATTGGTAAATCTATTTTAACATTGATTGGTTTTGTGCCCTCAAGTTTACATATTAAGTTACGAGGGTGGCAACAGAAAACCAGGCAGACAGATAAGACAGATAAGACAATCTTTGAGAAAATGATGAAACATCCAACGGCTCCTCAGAACACCTGCTGTTCCCATTTCTAATATAAACACATCACTGGGTTTCACTCCTCTGGACAAAGcattcatttttgctttttaaaaggaTCTAGACTCTCTTCCCCCCAGGAGAAAGGGTTGAGAAATGGCATTTGAGCCACTGGCCGCACAGAGCACTTTTCTGCAGGCAGCTCAGTCATACACAGTAATATAGAGACAGGCGAGGCTAGGAACAGCTCAGTGC

Function

GO:

id name namespace
GO:0044429 obsolete mitochondrial part cellular_component

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU15565 False 302 lncRNA 0.42 2 14576587 14615709
TU15566 True 2891 lncRNA 0.45 3 14576587 14581329

Neighbor

gene id symbol gene type direction distance location
AMCG00016286 cbl,LOC102193754 coding upstream 1038 14540441 ~ 14575549 (+)
AMCG00016285 cblb,LOC107576804,LOC107699267 coding upstream 72896 14502134 ~ 14503691 (+)
AMCG00016278 NA coding upstream 192908 14348972 ~ 14383679 (+)
AMCG00016279 hlcs coding upstream 277808 14296362 ~ 14298779 (+)
AMCG00016271 NA coding upstream 293997 14270317 ~ 14282590 (+)
AMCG00016292 NA coding downstream 202166 14817875 ~ 14827375 (+)
AMCG00016290 NA coding downstream 215018 14830727 ~ 14843857 (+)
AMCG00016291 NA coding downstream 229127 14844836 ~ 14845843 (+)
AMCG00016295 NA coding downstream 320286 14935995 ~ 14944083 (+)
AMCG00016298 dlg2 coding downstream 372154 14987863 ~ 15041451 (+)
G12591 NA non-coding upstream 124833 14451510 ~ 14451754 (+)
G12589 NA non-coding upstream 127375 14448812 ~ 14449212 (+)
G12566 NA non-coding upstream 178173 14397249 ~ 14398414 (+)
G12549 NA non-coding upstream 191930 14383905 ~ 14384657 (+)
G12489 dyrk1a,LOC107744208 non-coding upstream 379953 14194935 ~ 14196634 (+)
G12712 NA non-coding downstream 848368 15464077 ~ 15464312 (+)
G12763 NA non-coding downstream 1125477 15741186 ~ 15743647 (+)
G12816 NA non-coding downstream 1303874 15919583 ~ 15924725 (+)
G12886 NA non-coding downstream 1917395 16533104 ~ 16533381 (+)
G12896 NA non-coding downstream 1993009 16608718 ~ 16608985 (+)
G12587 NA other upstream 137981 14437771 ~ 14438606 (+)
G12351 NA other upstream 939586 13635442 ~ 13637001 (+)
G12349 NA other upstream 944790 13631285 ~ 13631797 (+)
G12348 NA other upstream 948876 13621879 ~ 13627711 (+)
AMCG00016241 NA other upstream 1186951 13271584 ~ 13389636 (+)
AMCG00016288 NA other downstream 129607 14745316 ~ 14783535 (+)
AMCG00016329 NA other downstream 1868646 16484355 ~ 16486003 (+)
G13012 NA other downstream 2501084 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 2946709 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 3803308 18419017 ~ 18473689 (+)

Expression


Co-expression Network