G12763


Basic Information

Item Value
gene id G12763
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15741186 ~ 15743647 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15803
GCACCAATTATACACCACATTCAACAcataacaaaatgaacaaaaggttttttttttttgttttgttttttaaaaagtaacaagttttccatacaaaatataacatttactaAATCTGATTCACAGaagtataaatataatcttctgaagaatattatttgtatatcaaAACAtactttacatttctttacaaaGCACAGTACAATCTGTACATTTCATAGTAGACAAATGAGTGCAGGGGCATCCAGAATTGGGTAGAGCATTCAAAGCTTTTCAGACAAGTCTGATGCTAATCAACAAATACAGAATCATAGGTACAGAGAAGTTCCTTATagggaaaaacatattttgtgtcCAGAAAACCAAAAACTCATGAAGACTTctgaacaaaaatgaataaatatcatATACTTGGCTTGGAATTTAAGTTTAGACAGCATCATATTGGTCATAAAGTATAAGTAGACCAGCAGTCCCATGCATTTTAGGGAAATGTGAAGCCTGAATGAGTATGACCCAGTTTGATTTGTCCAGTAATGCCAGAGTTTCACTTAGAAGAGTAACAACATTTATATAACAAGACTTAGCTGTAGGCGTTTAAGGAAATAAAGGACAGAATCACatactgtatttcagtttttttaactACTCTTACAAACATAATAGATGCAGAGTGTACTATAGTGTTatgaattgttattttatatttaaggaGCTAGAAGCATGGAGAAGTGGTAGAATACCTAGACCAGTTTTGACTAATGACAAACTACAGGGAAATACTGCAGAGCAAATATACAAAGTTCACATACAACTAATTAGATGCAAGTCCTGAAACAACCAAAAGTGTCTTGAAGCAATGTGTCATGAATAGTTTAAGTCTTCACCACAAGCAttctgtttttgattaatttaccAGGTCAAGGTGTTTTTGTAGACatgtattttatacacacagatagctttcaaagcagcattttctcacagtgatttgttttctggGAGATAACTGCAAATTTCTTGAAttcataaatattgaaaatatttattttattctttagaACAGAAAAAGGGCACTGTTGTAAGGTATCTAATACGTATTTAGCTTAGGCATAGGGTTAATGAAACATCTTTTTTAACTGCTcgttatatacatttaaaccacGTACACTTTCTACTTGTCACTGGAAACCAGCTCTTTAATTCGAAGCTGCATGGCATGCAGTACTGCAAAGGGCTACAGGCACCTGCTGTTTTAAGAGTGACTACCAAGAATTTCATCTAAATTAATGTCTTTTATCCAATCATCATTTCCAGAGCCTGATTTCAGCAGTGAGTCTATGAAGTCTGAATCAGAGTTAATGCCTGGAACGGTGTTGTCTCCGTCTTGGAGAAAATCAAAAGTCAGGTCACCACTGTGGTTGTTGCTCTGGTAGTTACGGGGGTTATGACCAGATGCTGTGAAATTGCCTGCAGTTGCCATCTGCACAGGAGAGAGCTGATTGGTGTTTGCCATGGTGGACAGAGCTGGCATTCTGGGCTGGCTTTGCCGTGGAGCAGGTCCTGTTGCTGCCACCACCGCCTGCCCATTGGGAGTTTGGTTCAAGGGGTTGATAGGGCGCATGGACACATCTGGCACTATCTGGTTTGGTGGCGTCATAGCTTTCTGTGGAAAGTGTCGATTGCCCATTTCCGGATGAGACTGTAGTGTATTTGGAAACCTCCTGACTCCTATTGGAGGAGGTGGGACAGCAGTCTGTTTGGAGCCTTGTGCCCAGTTGGGTGCAACTAAGCTAGAATTGGTTATCATACTGGCCATTCTCTGTCCTGGCATCCCAGACACCTCCTGGTTTACCGGTGGTCTCATATGCTGTGTACTTGTCACAGGACTAGGCCCAAAATTGTTACCCGGGATGGTAGATCCTTGATACCTGGAGTTATTTTGGTTCAGTCCGATCTGGTTTTGGTTGCTGTGTTGCTGAAGTTGGTTCATGCCCGTTTGGACATTAAAGCCCCCCTGCTGAGGGTCTGGACCACTGCCATACATCCTGTCATTGGGAGTAGGTGCCATCTTGTTGGCCTGACCAGAGGGAAGATGGCAGGGATTGCCTTGTAAACCACCCTGATTGGAAACTGTGTTTGTCATCGTCTGGGGAGGATTCATGCCCAAAGGAAGCCCACCGGGTATTGACTTGGCTGCTGTACTCCGACTATATGTCTTCTGGTCTGTTTGTAGTCGGGAGGAGGTCGGGTTAAATGTCGGTTTAACTGATCCTGGGGACTCATTtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15803 True 2289 lncRNA 0.49 2 15741186 15743647

Neighbor

gene id symbol gene type direction distance location
AMCG00016313 LOC107731450,LOC107703529 coding upstream 15341 15716894 ~ 15725845 (+)
AMCG00016312 yap1,LOC107662128,LOC107758259,LOC107746561,LOC107687356 coding upstream 43927 15683434 ~ 15697259 (+)
AMCG00016311 yap1,LOC107746561,LOC107687356 coding upstream 78926 15660319 ~ 15662260 (+)
AMCG00016306 NA coding upstream 83791 15650151 ~ 15657395 (+)
AMCG00016305 NA coding upstream 96239 15632388 ~ 15644947 (+)
AMCG00016314 NA coding downstream 81350 15824997 ~ 15836961 (+)
AMCG00016324 NA coding downstream 650324 16393971 ~ 16403344 (+)
AMCG00016322 NA coding downstream 686443 16430090 ~ 16435049 (+)
AMCG00016323 pcf11 coding downstream 702981 16446628 ~ 16461315 (+)
AMCG00016330 NA coding downstream 721804 16465451 ~ 16483942 (+)
G12712 NA non-coding upstream 276874 15464077 ~ 15464312 (+)
G12605 NA non-coding upstream 1125477 14576587 ~ 14615709 (+)
G12591 NA non-coding upstream 1289432 14451510 ~ 14451754 (+)
G12589 NA non-coding upstream 1291974 14448812 ~ 14449212 (+)
G12566 NA non-coding upstream 1342772 14397249 ~ 14398414 (+)
G12816 NA non-coding downstream 175936 15919583 ~ 15924725 (+)
G12886 NA non-coding downstream 789457 16533104 ~ 16533381 (+)
G12896 NA non-coding downstream 865071 16608718 ~ 16608985 (+)
G12901 NA non-coding downstream 880036 16623683 ~ 16623967 (+)
G12906 NA non-coding downstream 928485 16672132 ~ 16672496 (+)
AMCG00016288 NA other upstream 957651 14745316 ~ 14783535 (+)
G12587 NA other upstream 1302580 14437771 ~ 14438606 (+)
G12351 NA other upstream 2104185 13635442 ~ 13637001 (+)
G12349 NA other upstream 2109389 13631285 ~ 13631797 (+)
G12348 NA other upstream 2113475 13621879 ~ 13627711 (+)
AMCG00016329 NA other downstream 740708 16484355 ~ 16486003 (+)
G13012 NA other downstream 1373146 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 1818771 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 2675370 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 4131409 19875056 ~ 19879725 (+)

Expression


Co-expression Network