G12816


Basic Information

Item Value
gene id G12816
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15919583 ~ 15924725 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15864
taaacacaaaatattcgtttttatttttttttccactaaaGACTACACAGGGTCGCTGCTGTAGCTCTAGAAGGTatctacatttgcattttatttacagctttTATGTTTTGATCTTATTTACATGGCCAAAGAATACAGTGTTAGAAACACAAGgtgttgagaaaaaaaaatctcaaaatgaATCCAAAACTTTagaaaaagtacaattttaCAACACAACAGATCTCAGTGTGGTTTTCATAATGCAGTTTTCTTCCCCCACGTAAagtcttagttttttttaaactgcatttttaatgcTTACAAagtacagaataataaaaaaacaacctaaaacataaaaaactcaaaacaaaagtGTGATTTTACTTGAAAGGTATTTATAAAGATTGTGACACacttacatattttttctaagGATTTTTCTCCCTCTCAGGTGTCATGTAGTGTAAGTGGTAACAAGTCAGGCATCAGTGCAAAATTAGATTTCAATGTTACACCTGAAAAAGATACAGATCACCGCCACTTGTTCTCATGGCCAATGTAAGCTCATCACAAGTCATAGTTTTCTAAGTATTTAACACATTGACCACATATTTCATTTCCAAAGAGAAAATTCCAGTGTCTTGCATGTAAACCCAGGAAACATTGAAAAACACCCGGCTAACTAAATGTCCAGGAAGGTAAGCCAATAATTTGGGACCCAAGGTTGGTGTGCATGCAAATCTTTTAGCTTTCAGGGGTGAGCTCGTATATCTTCGGGTTTAATGCGCGTTGCTCCACTTTGGGACAGAGTCGACCATTTCAAGCAATAACTCAAGCGCTGAGGAGGTTGACCCCCAAAGCAGCACTGAAGGAATGCGCTGCGCAATAACAAAATTTCACACACTGTTCGTCGTCTCCAGCAGTCAATGTGTTAATAGCGTTGTTCTAAATGAAAGTATATGTTTTAGTAACGTGCtgtcttttaaaagcattcacAAGTCTTTTTTTAGAGGGCATAGTTATGCCACGTGATTCacagttgaaaataaaaaaatgcttaaaagaGCAAATTACTAAAAAGCACTTTGCATTAATACTGGCCTAAAAAgggtaaaaatgtaattctttacACTTAATCTTccacaaataaaccatttaaaaacaactttccAAACATGTTTATACTTTATTTCACATGTGCTGGAAACACCCTTAAATATTGTTCAAGTACAACAGTTAGCAATAAAAGGgacaatatttcacatttctgaattcacatttgttatactgtatgtatatatagaaaaaggaaaataaaactccagatttaaaatgaaaaacctttTGAGTAAAATACCTTTCAATGCTTTTATACAGATTTCAAAATTCCCCACTTGACATGGATTCACTGGATTCTGTTTTCACAATAGACTTCTATAGTGAccaaggaaaatataaataaattgtaattgacTGAAACACCAACCTATTAATTTCTATTATCACCTCCCCGCCCTCCCATCCCCCTCCATACAAGCTTTCACAAGTCCTTCTGGTCACAACCTCCCACCCCTGTAATGTTGAAAGAATTTGGTAAACTCTAGTGATAAACATAACTCATGTAAACTGAAATATAGTCAATTGTAAAAATACACTGGAATAACAACCCAGAGCCCTTGAGAGCTTGGACTTGGACTGAGACTGCTGATTTAGCCAGACTGaaactttgaaaaacattacaagaaATTACGATAAAATACAGAAGTTGACAAGTTCAGCTGAAACATGGACATAAGGAAATGGACAGCACAGGTGACCACATTGAGTCAGGTTATCTaggtttcttttcttccccccatAAGTGGCAAATGGGTTTTCAAGTATAAAAAGAAGCGAGGAAACGAGAACGCCTCTTCTTCTTGTCAGGAGCGTGAAAAAGCCTGGAATGAAACACGCTTGTGGATCACACTTTGCTTCACACAGGAGGCAGAGCAAACCAGTGAATATAATGCGTTTACACCACTCCATTTTGATTCCTTTTTAACAGACACACCAACAGGGacggaaaataaaataaaaaacaagtcaCTTAGATCGCGAACTTCATCCTCTTGCAATCCCTCTTCAATGGATTGtcgaaaataaaaatgaaaaacaattggGCACTCTTCAGTAAATACAGTGCGACTGTatagaacagtttttttttgtctgttttttgttttcaataaaaaaataagtaaaacacagTCAAAAAAAGTGGCCACATAAGCAGCTGTCTTTGGCAAGTAGTCCTCAATGCTGTCCATGTTTGTCACTCAGCCTCCCTGTGTTCATGTCACCTCCGGCCCATTTCACTCTGTCTCATGAAATGAATGTTGTTAACACTGTCTGACAGCTCGGGATACTGGTCCACTGAAATGACAAAGTAGCCGTCGTAGCCTTGCACCCTACCGGCGCTCAGCAACTGctgcttctctccctctgtccacGAGCGCGTGCCATCCTCGCCCTCCTGCAGTCTCTGCCGCTCTCGCCCCCAGGCCTGCGCCACCGCACGCTGCCTGGCCAGCTCCAGCACGCGCACCTTCTCCTCGTCTATGCTCGTCCCGTAGCGGGTGTTCAAGCACAGCGCCCCGTACTGGAGCTGGATGTCTGTGATTCGCCTAGTCCTGCCGTTCAGCACGGTGTTCATCTGCGACACCGTCACATTGACCCCCGTCTCCAGGGTCCTGCGGCCCACCGTCATGCCGATGAGCGCCAGGTCGTTCTCCACCGGCCCCAGCTTGACGAAGTAGTGGGTGTCGGTGCCGGCGATGGTGAAGTGCAGGTCCTGCAGGTAGAAGGCGTCGTTGAGCACCGCCGCCGTGCGCCGCCCGTCCTCGTTGGCCAGGCTGATGATGTCGGTGGTGACGCGCCCGTCTCTGATGGCGAACTTCACCCCTTTGCCGAAGATTGAGCCCCCCGAGGCGAAGCGGATTTGCCCCTCCGACTGCTGGCACCCTGCGCTGCTGGCACCATAGATCTGCCCGAAGCGCTCCAGCTTGACGAAGGCCTTCAACTGCCTCTGCACTTCACACTGCACTCCCAGCACCGACTGCGAAGAGACAGGAGAAGAGCGTTACAAGACAGTGTGATTGGGTGAAGGCTCACAGAGATGACTGACAACTTGGAAAGGGAAAAGGTCCAGCATGAGGCTGACAAATGATTGACAACATTGGACTCTGGTAAACACatgcacaaagaaaaaacagctgtgAAGTGTTTCTCTGTTTCCTAAAGGGACCCCAACACTATAGGCATGTTTCATCCTCTGGGGTTGAAAATCATCATCAGCTCTAATATTCCTTGACAAGAGATACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15864 True 3351 lncRNA 0.42 2 15919583 15924725

Neighbor

gene id symbol gene type direction distance location
AMCG00016314 NA coding upstream 82622 15824997 ~ 15836961 (+)
AMCG00016313 LOC107731450,LOC107703529 coding upstream 193738 15716894 ~ 15725845 (+)
AMCG00016312 yap1,LOC107662128,LOC107758259,LOC107746561,LOC107687356 coding upstream 222324 15683434 ~ 15697259 (+)
AMCG00016311 yap1,LOC107746561,LOC107687356 coding upstream 257323 15660319 ~ 15662260 (+)
AMCG00016306 NA coding upstream 262188 15650151 ~ 15657395 (+)
AMCG00016324 NA coding downstream 469246 16393971 ~ 16403344 (+)
AMCG00016322 NA coding downstream 505365 16430090 ~ 16435049 (+)
AMCG00016323 pcf11 coding downstream 521903 16446628 ~ 16461315 (+)
AMCG00016330 NA coding downstream 540726 16465451 ~ 16483942 (+)
AMCG00016334 NA coding downstream 581572 16506297 ~ 16520198 (+)
G12763 NA non-coding upstream 175936 15741186 ~ 15743647 (+)
G12712 NA non-coding upstream 455271 15464077 ~ 15464312 (+)
G12605 NA non-coding upstream 1303874 14576587 ~ 14615709 (+)
G12591 NA non-coding upstream 1467829 14451510 ~ 14451754 (+)
G12589 NA non-coding upstream 1470371 14448812 ~ 14449212 (+)
G12886 NA non-coding downstream 608379 16533104 ~ 16533381 (+)
G12896 NA non-coding downstream 683993 16608718 ~ 16608985 (+)
G12901 NA non-coding downstream 698958 16623683 ~ 16623967 (+)
G12906 NA non-coding downstream 747407 16672132 ~ 16672496 (+)
G12907 NA non-coding downstream 750168 16674893 ~ 16675189 (+)
AMCG00016288 NA other upstream 1136048 14745316 ~ 14783535 (+)
G12587 NA other upstream 1480977 14437771 ~ 14438606 (+)
G12351 NA other upstream 2282582 13635442 ~ 13637001 (+)
G12349 NA other upstream 2287786 13631285 ~ 13631797 (+)
G12348 NA other upstream 2291872 13621879 ~ 13627711 (+)
AMCG00016329 NA other downstream 559630 16484355 ~ 16486003 (+)
G13012 NA other downstream 1192068 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 1637693 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 2494292 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3950331 19875056 ~ 19879725 (+)

Expression


Co-expression Network