G12896


Basic Information

Item Value
gene id G12896
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16608718 ~ 16608985 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15967
atctaaatatagGGAGTTTTGcggtttgacatttccaagataGAGTCAAGAAGGCCATGAGTTAAATTGTCTAGACcttcacagaaatagttatgcgcgagtatgttatttatgatattatttctgcaacaatgacaaatttcagccccccttgccacggcaacatttcctccagtgagatattttaacaatgttaactCTGCAACTTCGGTTAAAggctaatcctacaataagaatacaatacaatgagttacatggttacagtagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15967 True 268 lncRNA 0.35 1 16608718 16608985

Neighbor

gene id symbol gene type direction distance location
AMCG00016337 NA coding upstream 45500 16557238 ~ 16563218 (+)
AMCG00016334 NA coding upstream 88520 16506297 ~ 16520198 (+)
AMCG00016330 NA coding upstream 124776 16465451 ~ 16483942 (+)
AMCG00016323 pcf11 coding upstream 147403 16446628 ~ 16461315 (+)
AMCG00016322 NA coding upstream 173669 16430090 ~ 16435049 (+)
AMCG00016346 NA coding downstream 127119 16736104 ~ 16740028 (+)
AMCG00016340 NA coding downstream 174481 16783466 ~ 16786942 (+)
AMCG00016339 NA coding downstream 185312 16794297 ~ 16807272 (+)
AMCG00016338 NA coding downstream 213932 16822917 ~ 16849192 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding downstream 242508 16851493 ~ 16862051 (+)
G12886 NA non-coding upstream 75337 16533104 ~ 16533381 (+)
G12816 NA non-coding upstream 683993 15919583 ~ 15924725 (+)
G12763 NA non-coding upstream 865071 15741186 ~ 15743647 (+)
G12712 NA non-coding upstream 1144406 15464077 ~ 15464312 (+)
G12605 NA non-coding upstream 1993009 14576587 ~ 14615709 (+)
G12901 NA non-coding downstream 14698 16623683 ~ 16623967 (+)
G12906 NA non-coding downstream 63147 16672132 ~ 16672496 (+)
G12907 NA non-coding downstream 65908 16674893 ~ 16675189 (+)
G12929 ppme1,LOC107715282 non-coding downstream 206592 16815577 ~ 16816331 (+)
G12966 NA non-coding downstream 267360 16876345 ~ 16876902 (+)
AMCG00016329 NA other upstream 122715 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 1825183 14745316 ~ 14783535 (+)
G12587 NA other upstream 2170112 14437771 ~ 14438606 (+)
G12351 NA other upstream 2971717 13635442 ~ 13637001 (+)
G12349 NA other upstream 2976921 13631285 ~ 13631797 (+)
G13012 NA other downstream 507808 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 953433 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1810032 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3266071 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 5173121 21782106 ~ 21832148 (+)

Expression


Co-expression Network