G12906


Basic Information

Item Value
gene id G12906
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16672132 ~ 16672496 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15977
CATATTCAAATTGATTTCATTGGTCCTTTAGCCAAAACATCACAGGGTTACCAGTATATTTTGGTTATCCTTGACAAATTCACAAAGTGGATTGAGGCTTTTCCTTGCAGGTGTGCCACTGCTGCCACTGTAGCGAAAACTCtcatacaaaatgtgttcactAGGTGGGGACTACCGAAGGTGACTGATAGTGATCgaggaacacatttcacaagcaGTGTAGTGAAAGTTATGTGTCAAGCATTAGGCATCACTCAGAAATTACACATTCCATTCCACCCTCAATCGTCAGGAGTAGTCGAGCGTGGAAACCGCACtctaaaaacacttttgaaaaaaatgtgtcaagACAATCCAAAAAGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15977 True 365 lncRNA 0.41 1 16672132 16672496

Neighbor

gene id symbol gene type direction distance location
AMCG00016337 NA coding upstream 108914 16557238 ~ 16563218 (+)
AMCG00016334 NA coding upstream 151934 16506297 ~ 16520198 (+)
AMCG00016330 NA coding upstream 188190 16465451 ~ 16483942 (+)
AMCG00016323 pcf11 coding upstream 210817 16446628 ~ 16461315 (+)
AMCG00016322 NA coding upstream 237083 16430090 ~ 16435049 (+)
AMCG00016346 NA coding downstream 63608 16736104 ~ 16740028 (+)
AMCG00016340 NA coding downstream 110970 16783466 ~ 16786942 (+)
AMCG00016339 NA coding downstream 121801 16794297 ~ 16807272 (+)
AMCG00016338 NA coding downstream 150421 16822917 ~ 16849192 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding downstream 178997 16851493 ~ 16862051 (+)
G12901 NA non-coding upstream 48165 16623683 ~ 16623967 (+)
G12896 NA non-coding upstream 63147 16608718 ~ 16608985 (+)
G12886 NA non-coding upstream 138751 16533104 ~ 16533381 (+)
G12816 NA non-coding upstream 747407 15919583 ~ 15924725 (+)
G12763 NA non-coding upstream 928485 15741186 ~ 15743647 (+)
G12907 NA non-coding downstream 2397 16674893 ~ 16675189 (+)
G12929 ppme1,LOC107715282 non-coding downstream 143081 16815577 ~ 16816331 (+)
G12966 NA non-coding downstream 203849 16876345 ~ 16876902 (+)
G13019 NA non-coding downstream 460818 17133314 ~ 17133530 (+)
G13021 NA non-coding downstream 471114 17143610 ~ 17146998 (+)
AMCG00016329 NA other upstream 186129 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 1888597 14745316 ~ 14783535 (+)
G12587 NA other upstream 2233526 14437771 ~ 14438606 (+)
G12351 NA other upstream 3035131 13635442 ~ 13637001 (+)
G12349 NA other upstream 3040335 13631285 ~ 13631797 (+)
G13012 NA other downstream 444297 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 889922 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1746521 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3202560 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 5109610 21782106 ~ 21832148 (+)

Expression


Co-expression Network