G12929 (ppme1,LOC107715282)


Basic Information

Item Value
gene id G12929
gene name ppme1,LOC107715282
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16815577 ~ 16816331 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16002
CTTGCATCTGTCCGATTGTGAGATCTTTATCCAGTCTGTCAACACCtgctagcagcagcagtttgGGAACAGAGCAGCTGAGGAAGAGACTGGACAGCCCCCTGAACCAGCCATCCCAGTACTTCTCTGTGTTGGCCAGCTCAATCCTCCATGTGTACAGGCACTCCTTCTTCACCTCCAGATCgtcatctttctttcttttattgttagactctctctcctcttcctcctcctcctcttcctcgatTATTCCCTCAACGATGCTCTTGGAGATAGCAGGGCTATCCAGGGGATCCTC

Function

symbol description
ppme1 Predicted to enable protein methylesterase activity. Predicted to be involved in protein demethylation. Orthologous to human PPME1 (protein phosphatase methylesterase 1).

NR:

description
PREDICTED: protein phosphatase methylesterase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16002 True 298 lncRNA 0.51 3 16815577 16816331

Neighbor

gene id symbol gene type direction distance location
AMCG00016339 NA coding upstream 8305 16794297 ~ 16807272 (+)
AMCG00016340 NA coding upstream 28635 16783466 ~ 16786942 (+)
AMCG00016346 NA coding upstream 75549 16736104 ~ 16740028 (+)
AMCG00016337 NA coding upstream 252359 16557238 ~ 16563218 (+)
AMCG00016334 NA coding upstream 295379 16506297 ~ 16520198 (+)
AMCG00016338 NA coding downstream 6586 16822917 ~ 16849192 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding downstream 35162 16851493 ~ 16862051 (+)
AMCG00016347 NA coding downstream 66373 16882704 ~ 16922938 (+)
AMCG00016349 fam168a,LOC107600264,LOC107594362 coding downstream 152101 16968432 ~ 17007785 (+)
AMCG00016356 fchsd2,LOC107600282,LOC107594367 coding downstream 386675 17203006 ~ 17232829 (+)
G12907 NA non-coding upstream 140388 16674893 ~ 16675189 (+)
G12906 NA non-coding upstream 143081 16672132 ~ 16672496 (+)
G12901 NA non-coding upstream 191610 16623683 ~ 16623967 (+)
G12896 NA non-coding upstream 206592 16608718 ~ 16608985 (+)
G12886 NA non-coding upstream 282196 16533104 ~ 16533381 (+)
G12966 NA non-coding downstream 60014 16876345 ~ 16876902 (+)
G13019 NA non-coding downstream 316983 17133314 ~ 17133530 (+)
G13021 NA non-coding downstream 327279 17143610 ~ 17146998 (+)
G13174 NA non-coding downstream 842426 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 1442937 18259268 ~ 18262343 (+)
AMCG00016329 NA other upstream 329574 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2032042 14745316 ~ 14783535 (+)
G12587 NA other upstream 2376971 14437771 ~ 14438606 (+)
G12351 NA other upstream 3178576 13635442 ~ 13637001 (+)
G12349 NA other upstream 3183780 13631285 ~ 13631797 (+)
G13012 NA other downstream 300462 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 746087 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1602686 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3058725 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4965775 21782106 ~ 21832148 (+)

Expression


Co-expression Network