G12978


Basic Information

Item Value
gene id G12978
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16918566 ~ 16924672 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16072
CCATCGTTAAGCTCGGACTCTGAAAAACAGCAGTGGCAAAGGCCTGTAGTTAAGAAAGTATGCGTGACATTGATTTGCAAAGGTTTTAttagaagcagaaaataaaaaaggcagacaATGTTCAAAACACAAGGAAAGTAATTGAATAGGcaggtgtttattttattttgttcaggcTTTGGGTATTAACATTGTCAAACAGAGGCTGAGGTACTTGTGATGTTTTAATGGCAAAACTAATTTCCAACGTCTTTGCAGTACTTCCAGTTAGCTTTTATCCCCCCCGACCTCTCCCtacaccccccaaccccaccccaccccaaagACATACCATACAGATAATCAGTAATGAATCAAATTGCACTGGCACAACAGTCAAGCCAAAGTGTGCTGTGATGTGTGTTTCGAACCCCTACAGCTACTCTAAATGTACACTACTTTATTACAGAAGCGTAGACAGCTCAGAATTCAGAACTCTCATACATCCTCCCCGTCGCACTcggaaagaaaagagaagccGCTCTCATCCAAATCGATTTGTTTTCCACAAGCTTCTTTGATTTCCTTTCTGTGGTCAAGGGTCATGTATTAGACAGTCATGCTTCAAACTAAGATGTGAATATTACAATCAACACCCTTTGACAAGAGGCCCAATTGAAatctttgaaatacatttattagattgtgttttcttgtgGCGCACAATAAAGGCTTTAATTGTagatacataatttatttcaaacataaggtgttttttttttttttttttttttaggttttttgttttacatgtacaAAAAAAGTAGCAAAAGTTTACACAATGATTTTTGTATAAGAAACCCAAGCCGCCAGACTATGTATATTGAAACCATACTGAAGAAGCATAAACGTGTTGAGAGCTTTCAAGCTAGTGAAGAGCCAAGAATCAACAGTACATTACAAGATCTGTCAAGCAGGATAAGCAGCTCTGTTTCGGTTAAAGATCAAGGCTAATAGAAGCTCATGTGAAGTAAGCTAGGCTCCTCCAAGCGTTTGATGTTGATGGACAACAAATatcttcttttaattattattaacaaggATACATCCAGTTGTATAGCAACAGGAAATCACGACAGCAATGAAACCGGTCACCCAGGCACAACTCCTCACCAGGATTTTAATTGTTACCAAAAAGCTATTTTGCCATAGTCACTAAATAGTTTCTTTATGGATGACAGAAAGACTGTGTGCCACAACAATTTTTAGCAGTGCAAATATGAGCCTCTGTGCATGGTATAGTATGTAGCAGTGATATCTTACCTTTCCTTAAAAAAGGATGGGAAAAGCAACCAGAGGTGACTAAAACAATCAAagacatttttcagaaaattgCACTGTACCGCGTGTGGGTTAAATTGTGCAGTGAGCAACAGGCAGGGCTAGAAGGATCGAGTGTATACCCTTGAGCTTTACAATAAGGGATTTGACAGatgcaaaataatgacaaaaataaaaagacaaattccTAAATGACATTTCTGTATGTAacataacaattacaataataataattaaaaaaacaaacaaaaaatgatctggtagaaataaatattacagaaaatggTTAATTAAATGAACATGTTAAATATCAACAACGAAAACAAAATCGCTTCGCTAAAGTGTCATATTACAAGGAGGTTAAATCAAATTTTACAAACCTAGCAAAAACCAAACCAGTGGAAGCCCAAATTATTAATgtctgagaaagaaagaaaaaaggcaaaatctGCATATTTTGTTCAGGTATCAAATATGATACTTCCCTTACTTTACAAAATGTAGTCTCGTGTTAAAAACCAATACACTCTCACATTTATGCAAGGGCGGTTTCACTTTCTTCATTATaacaaaggaaggaaaaataactaaatcaaCAGTTTATATCGGGATTAAATGACAATGGTAGGCAAACTGAAGACAACCTGTCCTCCTCGAGATACCAATCAGAAAAACATGCCAGGATGTAGAAGAGTTAAAAGGAGTTTATGAACGTCATAATCCTAAATGAAGCCATCACTGCATCAAAGTCTTTCCCTATAACATTCAATTTGATCTGAGGGATGGATGAATTGCTCCCCTTCCCATCTAGAAGTTAAAATTATCTGAAGGCTGAAAGGTTAGTGAAACGGCACAGACCTCCAGTAAAACTCCCCATTCTATCCGCAAGAGGCAATTATTGCCCAACACTGGCACACCTGCCCCTTTCAAAGCCAAATCAGACCATGTGAAACGATTATTTGAACTTCAAATACAGAACGTTGTACTCCGTTTGCTTTGTTGTGTAACTTAACGACAAACACTAAGTTCACGGTTACACCAATCTAAGGTAGTGAAAGACCAATTTGTATATGTGCtacttttcacacaaaatactaaaacaagTTCCATTTTTCATATGTGCATTATTTCAcatataaagcaaaataaaacacaattaaaaaaaaaaaaagtctataaGCCTAATTTTAACATCTGTCAGAACAATAGAGCCATTTTGATAACCTTTCAAGATTTAACAAAACGCACACCATTCCAATCCATTCTTGTGCTTGTGAAGCTAACGGGTCTTTTAATGAGACAGCCAACAATGATGAATTTATTCTTTAAtcgtgttgttttcttttctctttcttgcatgtagtgttttgtttagttttttttctgatgtggAAAGTTACAAGCTGATATTCACACTGCAGCTGATGGGAATGAGATAAGCAGTGGCATagaatgagaaagagagagatagagagttagagaaagagagagagttagagaAAGAATAAGATACATGGTATTAACATGAGCACCCCCCCTCGCTGACGGGCTGTTCTGGGGGCTTTTCCAGCTTTATGATACTGTCTTCTCTGCTCTTGTCCTGTGTGCTTTCCATGCCAGGCAAGGCTGCGGCAACACGCCGGAAAAGCTGAGGGGGACAGGAGAGAGCGCTCTGGAGTTATATTGCAATTTACAGAAGCAAGTCAAAATGAAGCAGAACTTTCTCACATATTATGTTATTGAGCTCCAAATATGTTAGGTTGGAAATTCAGCACTTTGACTTGTGATCTGCAGTGGTTTATCTGAACTGCTAGTGGCTGCACTGAAGTCAAGTGAcattcatttgtattgaaaaGACTTTAATGCATATACGGGGAAGGACTTCTTACCGTCATGAGATACTTAATTTATATCCTATAGGTTCAATTTCAAAGTGCCTCAAAACCAAAACCTTGAAACTTCTCTACTTCTTTAAAACTTAGTAATTACTGTTCGTTGAGAGCTTAACTTACACCACCGCAATGTTGAACTCTAAGGagccaaaaaaactaaaaacacaccaaaaaggACTTTTAAACCACACCAAGCCACACTAgcctttttgtttcattgccATTCAGACTTTTTCTAAAACACCCAGCCTCTTAATTAATTCAATAGATTGAGCTTCATTCAGaaattcagagaaaaaaaagacagctttTACCAAGCAGCACAATTCCTTCCTGAGGTGTAAGAGACAGTCCTTAAAATGGACCCTTTAAACATGGGGGTGGCTTGCTTTATTTGAAAAGATGTCGTAAAACTGGGGATATGAATAATTTGTCAAAATGCTCCTCTGAGAAGAGATTTTTTTAACTGCTGGTCAACAGATTTCACAGGTCTCATAACAGTCCATCTTGGATCAGCCTTATCCAAACAACTCTGCTTTGCTCCAAAATTTAAAATGGGCATTTTCAGAACAAGCTTCTTCATGTTAAAggttaattaatataaaaatctcTCAAGGGCACATTTTAAGAACAATTCTCTATGACATTAACATGAATGTCAAGGGTGAAAATTTAACACAGTCATGGCAAAGATCGGTAGTGCTTGAAAGGGATATGCTCCCAATGTTCTCGAAAGCCTGTTTGAACAGAATGATCAATACAAATCTACTTATGCATGCTTGCAATGTGGTCATATGGTCAGTAAAGTGTAAAGGACTGCAGGCTGCCATCCTTCACCAGATCTCAGATAATGAATTTAGGAAGCACACTATTTTAAAATTCCAAATATTGTTTAACTACATCAGAAAGGAATTAAGCCTgaataataaacttgttttaaGATCAAGAAGGTGCCAGGAATTCTACATAccaaaaaactaacaataacaattgaaaagcactttttttttggtgggggaaTAGGGCCTTTTACAGTGGAAATGTAAAACCATACAAGCACAGTGAAAGGTAAGCATAAGCTTTTCGACATGACTGTATTATGGTTAAGTTATTGGATTCACTTATTGCCACATTCTCTACAAACCATTACAATGGTGGGTCGAGTGATTCAAGAATGTCTCGCAGCCATTGGTGAAAATTTCAATGGCATAATTCCCTGACCATTTCATAAGCTGTTCTTCCTAATACAATAACTTTCCAATCTCTAATAGATGGATCTGCAGAGCAGCCAAATGACAGAATTTTAAAGGTCCCTGTTGTCAATGTGATGCATCTGTAAGGCTACTggttgacatttttaaatccaataTACTAACCATCAGTGGACCAAAAAGGTAAATTAAGTTAATAGTCATGCAGacttaaagcattacaaaataaattaatataatggtTTGTGCAGATGTGGTAAAacccaaacaattaaaaacaaaactaaaatcaagaCTACTTCTGTGCAGGCtgtcacacatttttctttaaaatactgatGAGAAGCACTGGCAGAGAATGGCCCTAGGACAGGACTGTCAAACTGTGATCCTCTGCCCCACACTACAACAGCATGCTCTACCTGCTTGACATTGTAGCCTGTCTTTGCACTTGTTTCAATAAAGAGCACATTCAGCTCTTTGGCTCTCTGCTCTCCCTCTTCAGTGGTTATCTGTCTGTACAGGAGGtaagacacagggacacaaaacaacaaaacaaaaaacaaaacgtaaacaaaaacaaaactaaacgaCAACTCACACTGTGTCATCTGTTCGCTGCTTGCTACAAATCCAAAACAGTGAATACTAATAGCCTGGTAATACGGACGGTGCTAACACACTAATGGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16072 True 5116 lncRNA 0.37 2 16918566 16924672

Neighbor

gene id symbol gene type direction distance location
AMCG00016342 NA coding downstream 37975 16876272 ~ 16880591 (-)
AMCG00016343 NA coding downstream 54174 16861180 ~ 16864392 (-)
AMCG00016344 ppme1,LOC107548200 coding downstream 96196 16811036 ~ 16822370 (-)
AMCG00016336 LOC107680719 coding downstream 143694 16757415 ~ 16774872 (-)
AMCG00016335 NA coding downstream 165576 16587491 ~ 16752990 (-)
AMCG00016348 NA coding upstream 4756 16929428 ~ 16938560 (-)
AMCG00016350 NA coding upstream 85059 17009731 ~ 17023094 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding upstream 115633 17040305 ~ 17071447 (-)
AMCG00016353 NA coding upstream 179302 17103974 ~ 17117735 (-)
AMCG00016352 NA coding upstream 198034 17122706 ~ 17123239 (-)
G12921 NA non-coding downstream 126897 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 168647 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 294660 16623683 ~ 16623906 (-)
G12897 NA non-coding downstream 309622 16608718 ~ 16608944 (-)
G12894 NA non-coding downstream 322346 16595678 ~ 16596220 (-)
G13045 rps3 non-coding upstream 317272 17241944 ~ 17246330 (-)
G13065 clns1a,LOC102781126 non-coding upstream 359731 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 450594 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 569183 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 571251 17495923 ~ 17496347 (-)
AMCG00016345 NA other downstream 48564 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 57387 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 443396 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2126597 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2491276 14420356 ~ 14427290 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 338929 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 613362 17538034 ~ 17541342 (-)
G13367 NA other upstream 2166567 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 3204236 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3691837 20616509 ~ 20636960 (-)

Expression


Co-expression Network