G13012


Basic Information

Item Value
gene id G13012
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17116793 ~ 17121932 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16114
GGCACACATCAGGGAGCCGGTCCTGCAAATGCAAGCTGGGGAGCTGCACTTCATCGGGGGCTGTAGTCCTGAAAGCCATTTCCAAGTCTCGACTTGGCTCAGCTAGAAAAGTTTCTTTCCCATCCACACAGCCCACTGATCCGCCGCTATCATGGTCGGCGTCCACTCTGGAGGCTGCGGGCGGCGGTCTCTGGTGCACAGGGGTGGGCGcactgtctctcacacagcCGGCTTGCACAGCCGCACACTTCAGGTCGTCCGCGTCCGAGCTGGACCGGTGCTGCTTTCGGTGCCCGTCTCCAAACAGCTTGCGGATCTGTGTCACACTTGGCCAGTTTGTCATTTCGACATGAGCGCCCTCGGCTGTGTCCCGCTGCGACCTGCCCGCCGCGACCCCACTAACAAACACCTCATCctcggcggcggcggcggcggcagtCCTTAGCAAAGTAGCGGCAGCGGCAGCGGGTACAGAAACTTTCTTACCTGCGGGCACCGACTCACCCCCGGAGTCCTGGCACCTCCACGCAGGCGGCTCTAGCAAGTCCTCCTCGGGCTCCGGCAAACGTCCCCTCTCGTCCCTGGGCAGCTTGTGGGAAGGTAAGCCCTCAGCCCTGCCTTGGCTCCGGGCCGGGGCGCAGTCTCTGGCGGGGAGGGTGCTGAATCTCTCGGAGAGCTGGCGGATGGACGGcgagatggagagggagggcAGAGCGGCGCTCCTCTTCAGCTGCGCGGCGGCCACATTGGCAGCTGAGATTTTGGAGACTCTCCTGGCCGCGGCCGGCTCTGCAGCCGAGGGGGGATGGGCGCCGCCCGGGACGGCGGCGCGGCGGGGCTGGGGGTGCTGCGCGGCCGGGCGGCTCTTATTTGCGCTCCAGCTCTCCAGTCTCTTGAAAGAAACGCTCCTGTACAGCTTTCGCCTCTGGTGCTCCTCCGCCATGCTGCCGGGCCTGTGCGCGGCGTCTAGCGCATGGACACTCGTAACCCAGCCAGCGCGGCTCTAGGCCCCCATTTGCGCTCCTGCGCGCACAAAACCGCAGGGAAGCGTCGCTCGCACGGGCTGCCGAGTTAAAGCGCAGTCCGAGGCGGGACGCGGGGCATCGTGAGCTGAGCGGGACCTGGCGTCGTGGCTGCCGGCTGGGCTGTGTTATCCGTGCACGGACAGAGGCTCAAACTTCGGCCAAAGTTTCCTCGCAGCTCCTTCAGCGGTGCAGCCCCTCCATCTGCTTCTCGAAAAGGTCCATGTCCCCCGTCGAAATGCCATTTCCAGCGCTGCCGGGCTCATCCCGTCCTCGCTCACAGGACAACTCAGGCCAACAGGATGCAACTGGATTTGTCACGTGAGGACGGAAGGCATTTCTCCCTTAACCGCAGTTCAGATGAGCCAGGGCACTATTTACTCAGTACCTAGACAAAAGCAagtcatttcacattttctcttttgCCCCTCAGTCCAGAGATCATCAAAACAAgtgctaagaaagaaataataatactaaagaCTAGTACTTAAATTATTCAGGGAATAGATGCCACCTATTGGCAGTGATCTCATAAGAGTACTCTATGTTTTCTTGCCCTTGGGCACTGAGACCTCTCATCAGATGTGCATGTTGCCTCTGACTGCCATTGTGAGTCACAATACAGAACATAAAGCAGAGactactataataatatatatatatacaaatatttgttataaGTCAACTAAGTCAACTTGGCACTTGTCAACATGTCACGTATATTTGGACTGGAAGATATCATAAAGTCTGTTGACctaggtgttttgttttccatattatAAAGGCGATAAAGTCATTATTGACAACTATCAACTGACTCTAAACTTCAGAGATAACTGTAAGGTAtaagtgtaaaatgtttaatgttgttCAGTTCTTTGGCTATGGCTTAAGCGGTTAAAACATATTAACCATGGACTCCTTCAAGATCGACAATGACACAAGCACCTAGAGACACTAATACAATCTGAGTGTAAAAGCATTCAGAACTGAACACAGAGGCACAAAGAGGTGAATCTTCAATGCTGTTGGAGCCGAATCACTGGGATCCTTAACGATATGTGACGATGCCATCCTTGGAGAGCTTAATAGCGTTCAAATGAGCACGATGAGTCAAGTGCCCTGCTTGTGTTTGTAAGCTCACATGGTTGTGTATGATCTATGTAATACCGTGAGAAAGGAGGCCCTCCAGCAATCCTGAGATGACTATAAACACTGATGTAAATGAGAGGTGCTCATCTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16114 True 2268 TUCP 0.55 2 17116793 17121932

Neighbor

gene id symbol gene type direction distance location
AMCG00016349 fam168a,LOC107600264,LOC107594362 coding upstream 109008 16968432 ~ 17007785 (+)
AMCG00016347 NA coding upstream 193855 16882704 ~ 16922938 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding upstream 254742 16851493 ~ 16862051 (+)
AMCG00016338 NA coding upstream 267601 16822917 ~ 16849192 (+)
AMCG00016339 NA coding upstream 309521 16794297 ~ 16807272 (+)
AMCG00016356 fchsd2,LOC107600282,LOC107594367 coding downstream 81074 17203006 ~ 17232829 (+)
AMCG00016355 NA coding downstream 111344 17233276 ~ 17240318 (+)
AMCG00016359 rps3,LOC102795110 coding downstream 119947 17241879 ~ 17246793 (+)
AMCG00016358 NA coding downstream 125745 17247677 ~ 17250675 (+)
AMCG00016357 ints4 coding downstream 129618 17251550 ~ 17263292 (+)
G12966 NA non-coding upstream 239891 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 300462 16815577 ~ 16816331 (+)
G12907 NA non-coding upstream 441604 16674893 ~ 16675189 (+)
G12906 NA non-coding upstream 444297 16672132 ~ 16672496 (+)
G12901 NA non-coding upstream 492826 16623683 ~ 16623967 (+)
G13019 NA non-coding downstream 11382 17133314 ~ 17133530 (+)
G13021 NA non-coding downstream 21678 17143610 ~ 17146998 (+)
G13174 NA non-coding downstream 536825 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 1137336 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 1143270 18265202 ~ 18265406 (+)
AMCG00016329 NA other upstream 630790 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2333258 14745316 ~ 14783535 (+)
G12587 NA other upstream 2678187 14437771 ~ 14438606 (+)
G12351 NA other upstream 3479792 13635442 ~ 13637001 (+)
G12349 NA other upstream 3484996 13631285 ~ 13631797 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 440486 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1297085 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 2753124 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4660174 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 6744335 23866267 ~ 23882946 (+)

Expression


Co-expression Network